Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Innovations to culturing the uncultured microbial majority

WH Lewis, G Tahon, P Geesink, DZ Sousa… - Nature Reviews …, 2021 - nature.com
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …

Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major …

DW Waite, M Chuvochina, C Pelikan… - … of Systematic and …, 2020 - microbiologyresearch.org
The class Deltaproteobacteria comprises an ecologically and metabolically diverse group of
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …

Global diversity of microbial communities in marine sediment

T Hoshino, H Doi, GI Uramoto… - Proceedings of the …, 2020 - National Acad Sciences
Microbial life in marine sediment contributes substantially to global biomass and is a crucial
component of the Earth system. Subseafloor sediment includes both aerobic and anaerobic …

Bacterial microcompartments

CA Kerfeld, C Aussignargues, J Zarzycki… - Nature Reviews …, 2018 - nature.com
Bacterial microcompartments (BMCs) are self-assembling organelles that consist of an
enzymatic core that is encapsulated by a selectively permeable protein shell. The potential …

Phylogenetically novel uncultured microbial cells dominate earth microbiomes

KG Lloyd, AD Steen, J Ladau, J Yin, L Crosby - MSystems, 2018 - Am Soc Microbiol
To describe a microbe's physiology, including its metabolism, environmental roles, and
growth characteristics, it must be grown in a laboratory culture. Unfortunately, many …

The fate of organic carbon in marine sediments-New insights from recent data and analysis

DE LaRowe, S Arndt, JA Bradley, ER Estes… - Earth-Science …, 2020 - Elsevier
Organic carbon in marine sediments is a critical component of the global carbon cycle, and
its degradation influences a wide range of phenomena, including the magnitude of carbon …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

Syntrophic propionate-oxidizing bacteria in methanogenic systems

M Westerholm, M Calusinska… - FEMS Microbiology …, 2022 - academic.oup.com
The mutual nutritional cooperation underpinning syntrophic propionate degradation
provides a scant amount of energy for the microorganisms involved, so propionate …

Microbial community assembly and evolution in subseafloor sediment

P Starnawski, T Bataillon, TJG Ettema… - Proceedings of the …, 2017 - National Acad Sciences
Bacterial and archaeal communities inhabiting the subsurface seabed live under strong
energy limitation and have growth rates that are orders of magnitude slower than laboratory …