Stochastic thermodynamics, fluctuation theorems and molecular machines
U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …
extending the notions of classical thermodynamics such as work, heat and entropy …
Phosphorylation energy hypothesis: open chemical systems and their biological functions
H Qian - Annu. Rev. Phys. Chem., 2007 - annualreviews.org
Biochemical systems and processes in living cells generally operate far from equilibrium.
This review presents an overview of a statistical thermodynamic treatment for such systems …
This review presents an overview of a statistical thermodynamic treatment for such systems …
[图书][B] Extended irreversible thermodynamics
Our aim is to propose a theory which goes beyond the classical formulation of
thermodynamics. This is achieved by enlarging the space of basic independent variables …
thermodynamics. This is achieved by enlarging the space of basic independent variables …
Stochastic thermodynamics: principles and perspectives
U Seifert - The European Physical Journal B, 2008 - Springer
Stochastic thermodynamics provides a framework for describing small systems like colloids
or biomolecules driven out of equilibrium but still in contact with a heat bath. Both, a first-law …
or biomolecules driven out of equilibrium but still in contact with a heat bath. Both, a first-law …
Physical origins of entropy production, free energy dissipation, and their mathematical representations
A unifying mathematical theory of nonequilibrium thermodynamics of stochastic systems in
terms of master equations is presented. As generalizations of isothermal entropy and free …
terms of master equations is presented. As generalizations of isothermal entropy and free …
New method to analyze simulations of activated processes
We present a new method to analyze molecular and Brownian dynamics simulations of
activated processes based on the concept of mean first-passage times. The new method …
activated processes based on the concept of mean first-passage times. The new method …
Nonequilibrium fluctuations in small systems: From physics to biology
F Ritort - Advances in chemical physics, 2008 - Wiley Online Library
Thermodynamics, a scientific discipline inherited from the 18th century, is facing new
challenges in the description of nonequilibrium small (sometimes also called mesoscopic) …
challenges in the description of nonequilibrium small (sometimes also called mesoscopic) …
Open-system nonequilibrium steady state: statistical thermodynamics, fluctuations, and chemical oscillations
H Qian - The Journal of Physical Chemistry B, 2006 - ACS Publications
Gibbsian equilibrium statistical thermodynamics is the theoretical foundation for isothermal,
closed chemical, and biochemical reaction systems. This theory, however, is not applicable …
closed chemical, and biochemical reaction systems. This theory, however, is not applicable …
Coherent science at the SwissFEL x-ray laser
BD Patterson, R Abela, HH Braun… - New Journal of …, 2010 - iopscience.iop.org
Abstract The Paul Scherrer Institute is planning the construction of a hard-x-ray free-electron
laser, the SwissFEL, by 2016, which will produce intense, ultrashort pulses of transversely …
laser, the SwissFEL, by 2016, which will produce intense, ultrashort pulses of transversely …