Improving protein identification using complementary fragmentation techniques in Fourier transform mass spectrometry
Identification of proteins by MS/MS is performed by matching experimental mass spectra
against calculated spectra of all possible peptides in a protein data base. The search engine …
against calculated spectra of all possible peptides in a protein data base. The search engine …
WAS IT A MATch I SAW? Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences
G Glidden-Handgis, TJ Wheeler - Bioinformatics Advances, 2024 - academic.oup.com
Background Software for labeling biological sequences typically produces a theory-based
statistic for each match (the E-value) that indicates the likelihood of seeing that match's score …
statistic for each match (the E-value) that indicates the likelihood of seeing that match's score …
[HTML][HTML] RepEx: repeat extractor for biological sequences
M Gurusaran, D Ravella, K Sekar - Genomics, 2013 - Elsevier
Genomic sequences are far from being random but are made up of systematically ordered
and information rich patterns. These repeated sequence patterns have been vastly utilized …
and information rich patterns. These repeated sequence patterns have been vastly utilized …
Palindromic vectors, symmetropy and symmentropy as symmetry descriptors of binary data
JM Girault, S Ménigot - Entropy, 2022 - mdpi.com
Today, the palindromic analysis of biological sequences, based exclusively on the study of
“mirror” symmetry properties, is almost unavoidable. However, other types of symmetry, such …
“mirror” symmetry properties, is almost unavoidable. However, other types of symmetry, such …
[PDF][PDF] Secure blind data hiding into pseudo DNA sequences using playfair ciphering and generic complementary substitution
Steganography provides unconventional solutions to protect communication as well as
copyright of intellectual property. In this paper, we propose a steganographic method that …
copyright of intellectual property. In this paper, we propose a steganographic method that …
Easily readable palindromic sequence-defined polymers built by cascade thiol-maleimide Michael couplings
Q Shi, X Cao, Y Zhang, S Duan, L Hu, Y Xu, J Lu… - Polymer …, 2020 - pubs.rsc.org
Palindromic sequence-induced specific and genetic functions widely exist in biological
systems. Nevertheless, the study of synthetic palindromic sequence-defined polymers has …
systems. Nevertheless, the study of synthetic palindromic sequence-defined polymers has …
Anytime algorithms for the longest common palindromic subsequence problem
The longest common palindromic subsequence (LCPS) problem aims at finding a longest
string that appears as a subsequence in each of a set of input strings and is a palindrome at …
string that appears as a subsequence in each of a set of input strings and is a palindrome at …
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins
A Sheari, M Kargar, A Katanforoush, S Arab… - BMC …, 2008 - Springer
Background It has been previously shown that palindromic sequences are frequently
observed in proteins. However, our knowledge about their evolutionary origin and their …
observed in proteins. However, our knowledge about their evolutionary origin and their …
A secure steganographic channel using DNA sequence data and a bio-inspired XOR cipher
A Khalifa - Information, 2021 - mdpi.com
Secure communication is becoming an urgent need in a digital world where tera bytes of
sensitive information are sent back and forth over public networks. In this paper, we combine …
sensitive information are sent back and forth over public networks. In this paper, we combine …
'Click'chemistry synthesis and capillary electrophoresis study of 1, 4‐linked 1, 2, 3‐triazole AZT‐systemin conjugate
M Dobkowski, A Szychowska, M Pieszko… - Journal of Peptide …, 2014 - Wiley Online Library
The Cu (I) catalyzed Huisgen 1, 3‐dipolar azide‐alkyne cycloaddition (CuAAC) was applied
for a nucleoside‐peptide bioconjugation. Systemin (Sys), an 18‐aa plant signaling peptide …
for a nucleoside‐peptide bioconjugation. Systemin (Sys), an 18‐aa plant signaling peptide …