Evolution and genome architecture in fungal plant pathogens

M Möller, EH Stukenbrock - Nature Reviews Microbiology, 2017 - nature.com
The fungal kingdom comprises some of the most devastating plant pathogens. Sequencing
the genomes of fungal pathogens has shown a remarkable variability in genome size and …

Histone methylation by SET domain proteins in fungi

M Freitag - Annual review of microbiology, 2017 - annualreviews.org
Histone-modifying enzymes are responsible for regulating transcription, recombination, DNA
repair, DNA replication, chromatid cohesion, and chromosome segregation. Fungi are …

A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen

A Feurtey, C Lorrain, MC McDonald, A Milgate… - Nature …, 2023 - nature.com
Human activity impacts the evolutionary trajectories of many species worldwide. Global
trade of agricultural goods contributes to the dispersal of pathogens reshaping their genetic …

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

SB Goodwin, S Ben M'Barek, B Dhillon… - PLoS …, 2011 - journals.plos.org
The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici)
causes septoria tritici blotch, a disease that greatly reduces the yield and quality of wheat …

Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen

U Oggenfuss, D Croll - PLoS Pathogens, 2023 - journals.plos.org
The activity of transposable elements (TEs) contributes significantly to pathogen genome
evolution. TEs often destabilize genome integrity but may also confer adaptive variation in …

Accessories make the outfit: accessory chromosomes and other dispensable DNA regions in plant-pathogenic fungi

S Bertazzoni, AH Williams, DA Jones… - Molecular Plant …, 2018 - Am Phytopath Society
Fungal pathogen genomes can often be divided into core and accessory regions. Accessory
regions ARs) may be comprised of either ARs (within core chromosomes (CCs) or wholly …

Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

K Schotanus, JL Soyer, LR Connolly… - Epigenetics & …, 2015 - Springer
Background Supernumerary chromosomes have been found in many organisms. In fungi,
these “accessory” or “dispensable” chromosomes are present at different frequencies in …

Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae

J Jeon, J Choi, GW Lee, SY Park, A Huh, RA Dean… - Scientific reports, 2015 - nature.com
DNA methylation is an important epigenetic modification that regulates development of
plants and mammals. To investigate the roles of DNA methylation in fungal development, we …

RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and …

J Grandaubert, A Bhattacharyya… - G3: Genes, Genomes …, 2015 - academic.oup.com
The fungal pathogen Zymoseptoria tritici (synonym Mycosphaerella graminicola) is a
prominent pathogen of wheat. The reference genome of the isolate IPO323 is one of the best …

Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses

C Lorrain, A Feurtey, M Möller, J Haueisen… - G3, 2021 - academic.oup.com
Transposable elements (TEs) impact genome plasticity, architecture, and evolution in fungal
plant pathogens. The wide range of TE content observed in fungal genomes reflects diverse …