Co-expression networks for plant biology: why and how
X Rao, RA Dixon - Acta biochimica et biophysica Sinica, 2019 - academic.oup.com
Co-expression network analysis is one of the most powerful approaches for interpretation of
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data
Motivation The biclustering of large-scale gene expression data holds promising potential
for detecting condition-specific functional gene modules (ie biclusters). However, existing …
for detecting condition-specific functional gene modules (ie biclusters). However, existing …
Biclustering data analysis: a comprehensive survey
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …
its effectiveness in bioinformatics due to its capacity to produce local instead of global …
Nitrogen remobilization and conservation, and underlying senescence‐associated gene expression in the perennial switchgrass Panicum virgatum
Improving nitrogen (N) remobilization from aboveground to underground organs during
yearly shoot senescence is an important goal for sustainable production of switchgrass …
yearly shoot senescence is an important goal for sustainable production of switchgrass …
Transcriptome-wide effects of expansin gene manipulation in etiolated Arabidopsis seedling
IA Ilias, K Negishi, K Yasue, N Jomura… - Journal of plant …, 2019 - Springer
Expansin is a non-enzymatic protein which plays a pivotal role in cell wall loosening by
inducing stress relaxation and extension in the plant cell wall. Previous studies on …
inducing stress relaxation and extension in the plant cell wall. Previous studies on …
Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells
X Rao, H Shen, S Pattathil, MG Hahn… - Biotechnology for …, 2017 - Springer
Background Plant cell walls contribute the majority of plant biomass that can be used to
produce transportation fuels. However, the complexity and variability in composition and …
produce transportation fuels. However, the complexity and variability in composition and …
[HTML][HTML] Transcriptome-Based Screening of Candidate Low-Temperature-Associated Genes and Analysis of the BocARR-B Transcription Factor Gene Family in …
S Bian, D Shao, Q Zhao, Q Li, Y Ren - International Journal of Molecular …, 2024 - mdpi.com
Low temperature is a significant abiotic stress factor that not only impacts plant growth,
development, yield, and quality but also constrains the geographical distribution of …
development, yield, and quality but also constrains the geographical distribution of …
Downregulation of a UDP-Arabinomutase Gene in Switchgrass (Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans
Background: Switchgrass (Panicum virgatum L.) is a C4 perennial prairie grass and a
dedicated feedstock for lignocellulosic biofuels. Saccharification and biofuel yields are …
dedicated feedstock for lignocellulosic biofuels. Saccharification and biofuel yields are …
[HTML][HTML] Irreversibility of the cell wall modification acts as a limiting factor in desiccation tolerance of Oryza sativa ssp. Indica cv MR303
Desiccation tolerance has emerged as a potential strategy for crop improvement. However,
the application of desiccation tolerance in crops, particularly rice, has been challenging and …
the application of desiccation tolerance in crops, particularly rice, has been challenging and …