Alternative splicing and evolution: diversification, exon definition and function

H Keren, G Lev-Maor, G Ast - Nature Reviews Genetics, 2010 - nature.com
Over the past decade, it has been shown that alternative splicing (AS) is a major mechanism
for the enhancement of transcriptome and proteome diversity, particularly in mammals …

Origin and evolution of spliceosomal introns

IB Rogozin, L Carmel, M Csuros, EV Koonin - Biology direct, 2012 - Springer
Evolution of exon-intron structure of eukaryotic genes has been a matter of long-standing,
intensive debate. The introns-early concept, later rebranded 'introns first'held that protein …

Genome reduction as the dominant mode of evolution

YI Wolf, EV Koonin - Bioessays, 2013 - Wiley Online Library
A common belief is that evolution generally proceeds towards greater complexity at both the
organismal and the genomic level, numerous examples of reductive evolution of parasites …

The fibrillar collagen family

JY Exposito, U Valcourt, C Cluzel… - International journal of …, 2010 - mdpi.com
Collagens, or more precisely collagen-based extracellular matrices, are often considered as
a metazoan hallmark. Among the collagens, fibrillar collagens are present from sponges to …

The origin and early evolution of eukaryotes in the light of phylogenomics

EV Koonin - Genome biology, 2010 - Springer
The origin and early evolution of eukaryotes in the light of phylogenomics | Genome Biology
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Dynamics of genomic innovation in the unicellular ancestry of animals

X Grau-Bove, G Torruella, S Donachie, H Suga… - Elife, 2017 - elifesciences.org
Which genomic innovations underpinned the origin of multicellular animals is still an open
debate. Here, we investigate this question by reconstructing the genome architecture and …

Transposable elements drive intron gain in diverse eukaryotes

L Gozashti, SW Roy, B Thornlow… - Proceedings of the …, 2022 - National Acad Sciences
There is massive variation in intron numbers across eukaryotic genomes, yet the major
drivers of intron content during evolution remain elusive. Rapid intron loss and gain in some …

Origin of spliceosomal introns and alternative splicing

M Irimia, SW Roy - Cold Spring Harbor perspectives in …, 2014 - cshperspectives.cshlp.org
In this work we review the current knowledge on the prehistory, origins, and evolution of
spliceosomal introns. First, we briefly outline the major features of the different types of …

Darwinian evolution in the light of genomics

EV Koonin - Nucleic acids research, 2009 - academic.oup.com
Comparative genomics and systems biology offer unprecedented opportunities for testing
central tenets of evolutionary biology formulated by Darwin in the Origin of Species in 1859 …

Evolution of genome architecture

EV Koonin - The international journal of biochemistry & cell biology, 2009 - Elsevier
Charles Darwin believed that all traits of organisms have been honed to near perfection by
natural selection. The empirical basis underlying Darwin's conclusions consisted of …