The peptide woods are lovely, dark and deep: Hunting for novel cancer antigens
Harnessing the patient's immune system to control a tumor is a proven avenue for cancer
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …
Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ
Alternative polyadenylation (APA) enables a gene to generate multiple transcripts with
different 3′ ends, which is dynamic across different cell types or conditions. Many …
different 3′ ends, which is dynamic across different cell types or conditions. Many …
Therapeutic targeting of CPSF3-dependent transcriptional termination in ovarian cancer
P Shen, K Ye, H Xiang, Z Zhang, Q He, X Zhang… - Science …, 2023 - science.org
Transcriptional dysregulation is a recurring pathogenic hallmark and an emerging
therapeutic vulnerability in ovarian cancer. Here, we demonstrated that ovarian cancer …
therapeutic vulnerability in ovarian cancer. Here, we demonstrated that ovarian cancer …
RNA-seq analysis, targeted long-read sequencing and in silico prediction to unravel pathogenic intronic events and complicated splicing abnormalities in …
Dystrophinopathy is caused by alterations in DMD. Approximately 1% of patients remain
genetically undiagnosed, because intronic variations are not detected by standard methods …
genetically undiagnosed, because intronic variations are not detected by standard methods …
ipaQTL-atlas: an atlas of intronic polyadenylation quantitative trait loci across human tissues
Functional interpretation of disease-associated non-coding variants remains a significant
challenge in the post-GWAS era. Our recent study has identified 3′ UTR alternative …
challenge in the post-GWAS era. Our recent study has identified 3′ UTR alternative …
Crosstalk between metabolic and epigenetic modifications during cell carcinogenesis
Y Gao, X Zhang, Y Du, T Ni, S Hao - iScience, 2024 - cell.com
Genetic mutations arising from various internal and external factors drive cells to become
cancerous. Cancerous cells undergo numerous changes, including metabolic …
cancerous. Cancerous cells undergo numerous changes, including metabolic …
Intergenic splicing-stimulated transcriptional readthrough is suppressed by nonsense-mediated mRNA decay in Arabidopsis
Y Kurihara, Y Makita, M Kawauchi… - Communications …, 2022 - nature.com
Recent emerging evidence has shown that readthrough transcripts (RTs), including
polycistronic mRNAs, are also transcribed in eukaryotes. However, the post-transcriptional …
polycistronic mRNAs, are also transcribed in eukaryotes. However, the post-transcriptional …
Cooperative strand displacement circuit with dual-toehold and bulge-loop structure for single-nucleotide variations discrimination
D Bai, X Zhou, W Luo, H Yu, S Bai, Y Wu, L Song… - Biosensors and …, 2022 - Elsevier
Nucleic acid nanotechnologies based on toehold-mediated strand displacement are ideally
suited for single-nucleotide variations (SNVs) detection. But only a limited number of means …
suited for single-nucleotide variations (SNVs) detection. But only a limited number of means …
The landscape of cryptic antisense transcription in human cancers reveals an oncogenic noncoding RNA in lung cancer
Cryptic transcription initiation has been previously linked to activation of oncogenic
transcripts. However, the prevalence and impact of cryptic antisense transcription from the …
transcripts. However, the prevalence and impact of cryptic antisense transcription from the …
Recurrent disruption of tumour suppressor genes in cancer by somatic mutations in cleavage and polyadenylation signals
Y Kainov, F Hamid, EV Makeyev - eLife, 2024 - elifesciences.org
The expression of eukaryotic genes relies on the precise 3'-terminal cleavage and
polyadenylation of newly synthesized pre-mRNA transcripts. Defects in these processes …
polyadenylation of newly synthesized pre-mRNA transcripts. Defects in these processes …