[HTML][HTML] The ecology and evolution of pangenomes
Since the first genome-scale comparisons, it has been evident that the genomes of many
species are unbound by strict vertical descent: Large differences in gene content can occur …
species are unbound by strict vertical descent: Large differences in gene content can occur …
Pangenomics comes of age: from bacteria to plant and animal applications
The pangenome refers to a collection of genomic sequence found in the entire species or
population rather than in a single individual; the sequence can be core, present in all …
population rather than in a single individual; the sequence can be core, present in all …
[HTML][HTML] Population genomics confirms acquisition of drug-resistant Aspergillus fumigatus infection by humans from the environment
Infections caused by the fungal pathogen Aspergillus fumigatus are increasingly resistant to
first-line azole antifungal drugs. However, despite its clinical importance, little is known …
first-line azole antifungal drugs. However, despite its clinical importance, little is known …
[HTML][HTML] Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae
Pangenomes provide access to an accurate representation of the genetic diversity of
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …
[HTML][HTML] Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
[HTML][HTML] Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection
Aspergillus fumigatus is an environmental saprobe and opportunistic human fungal
pathogen. Despite an estimated annual occurrence of more than 300,000 cases of invasive …
pathogen. Despite an estimated annual occurrence of more than 300,000 cases of invasive …
[HTML][HTML] The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven …
Aspergillus fumigatus is a deadly agent of human fungal disease where virulence
heterogeneity is thought to be at least partially structured by genetic variation between …
heterogeneity is thought to be at least partially structured by genetic variation between …
[HTML][HTML] Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
AL Lind, KS Pollard - Microbiome, 2021 - Springer
Background Microbial eukaryotes are found alongside bacteria and archaea in natural
microbial systems, including host-associated microbiomes. While microbial eukaryotes are …
microbial systems, including host-associated microbiomes. While microbial eukaryotes are …
[HTML][HTML] A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
Background The gene content of a species largely governs its ecological interactions and
adaptive potential. A species is therefore defined by both core genes shared between all …
adaptive potential. A species is therefore defined by both core genes shared between all …
Recent advances in crustacean genomics and their potential application in aquaculture
J Yuan, Y Yu, X Zhang, S Li, J Xiang… - Reviews in …, 2023 - Wiley Online Library
Genomic resources are increasingly being used to improve the production efficiency and
profitability of aquaculture. Crustaceans are a large group of invertebrates that …
profitability of aquaculture. Crustaceans are a large group of invertebrates that …