[HTML][HTML] Computational methods to predict protein aggregation
In most cases, protein aggregation stems from the establishment of non-native
intermolecular contacts. The formation of insoluble protein aggregates is associated with …
intermolecular contacts. The formation of insoluble protein aggregates is associated with …
Protein aggregation: in silico algorithms and applications
Protein aggregation is a topic of immense interest to the scientific community due to its role
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …
Structure-based machine-guided mapping of amyloid sequence space reveals uncharted sequence clusters with higher solubilities
The amyloid conformation can be adopted by a variety of sequences, but the precise
boundaries of amyloid sequence space are still unclear. The currently charted amyloid …
boundaries of amyloid sequence space are still unclear. The currently charted amyloid …
Spiders use structural conversion of globular amyloidogenic domains to make strong silk fibers
X Qi, H Wang, K Wang, Y Wang… - Advanced Functional …, 2024 - Wiley Online Library
Spider silk—an environmentally friendly protein‐based material—is widely recognized for its
extraordinary mechanical properties. Biomimetic spider silk‐like fibers made from …
extraordinary mechanical properties. Biomimetic spider silk‐like fibers made from …
Spider silk protein forms amyloid‐like nanofibrils through a non‐nucleation‐dependent polymerization mechanism
X Qi, Y Wang, H Yu, R Liu, A Leppert, Z Zheng… - Small, 2023 - Wiley Online Library
Amyloid fibrils—nanoscale fibrillar aggregates with high levels of order—are pathogenic in
some today incurable human diseases; however, there are also many physiologically …
some today incurable human diseases; however, there are also many physiologically …
From prions to stress granules: defining the compositional features of prion-like domains that promote different types of assemblies
A Fomicheva, ED Ross - International journal of molecular sciences, 2021 - mdpi.com
Stress granules are ribonucleoprotein assemblies that form in response to cellular stress.
Many of the RNA-binding proteins found in stress granule proteomes contain prion-like …
Many of the RNA-binding proteins found in stress granule proteomes contain prion-like …
Protein co-aggregation related to amyloids: methods of investigation, diversity, and classification
SA Bondarev, KS Antonets, AV Kajava… - International journal of …, 2018 - mdpi.com
Amyloids are unbranched protein fibrils with a characteristic spatial structure. Although the
amyloids were first described as protein deposits that are associated with the diseases …
amyloids were first described as protein deposits that are associated with the diseases …
[HTML][HTML] Proteomic evidence for amyloidogenic cross-seeding in fibrinaloid microclots
DB Kell, E Pretorius - International Journal of Molecular …, 2024 - pmc.ncbi.nlm.nih.gov
In classical amyloidoses, amyloid fibres form through the nucleation and accretion of protein
monomers, with protofibrils and fibrils exhibiting a cross-β motif of parallel or antiparallel β …
monomers, with protofibrils and fibrils exhibiting a cross-β motif of parallel or antiparallel β …
Bioinformatics methods in predicting amyloid propensity of peptides and proteins
M Kotulska, JW Wojciechowski - … of Aggregation of Proteins and Peptides, 2022 - Springer
Several computational methods have been developed to predict amyloid propensity of a
protein or peptide. These bioinformatics tools are time-and cost-saving alternatives to …
protein or peptide. These bioinformatics tools are time-and cost-saving alternatives to …
Prediction and Evaluation of Protein Aggregation with Computational Methods
Protein and peptide aggregation has recently become one of the most studied biomedical
problems due to its central role in several neurodegenerative disorders and of …
problems due to its central role in several neurodegenerative disorders and of …