LC-MS alignment in theory and practice: a comprehensive algorithmic review

R Smith, D Ventura, JT Prince - Briefings in bioinformatics, 2015 - academic.oup.com
Liquid chromatography-mass spectrometry is widely used for comparative replicate sample
analysis in proteomics, lipidomics and metabolomics. Before statistical comparison …

The use of 'Omics technology to rationally improve industrial mammalian cell line performance

AM Lewis, NR Abu‐Absi, MC Borys… - Biotechnology and …, 2016 - Wiley Online Library
Biologics represent an increasingly important class of therapeutics, with 7 of the 10 top
selling drugs from 2013 being in this class. Furthermore, health authority approval of …

Development of a new ion mobility time-of-flight mass spectrometer

YM Ibrahim, ES Baker, WF Danielson III… - International journal of …, 2015 - Elsevier
A new ion mobility spectrometer (IMS) platform was developed to improve upon the
sensitivity and reproducibility of our previous platforms, and further enhance IMS–MS utility …

The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet

H Liu, C Chen, Z Gao, J Min, Y Gu, J Jian, X Jiang… - …, 2017 - academic.oup.com
The blunt snout bream Megalobrama amblycephala is the economically most important
cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource …

Proposed confidence scale and ID score in the identification of known-unknown compounds using high resolution MS data

B Rochat - Journal of the American Society for Mass Spectrometry, 2017 - ACS Publications
High-resolution (HR) MS instruments recording HR-full scan allow analysts to go further
beyond pre-acquisition choices. Untargeted acquisition can reveal unexpected compounds …

[HTML][HTML] From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

LP de Souza, T Naake, T Tohge, AR Fernie - GigaScience, 2017 - ncbi.nlm.nih.gov
The grand challenge currently facing metabolomics is the expansion of the coverage of the
metabolome from a minor percentage of the metabolic complement of the cell toward the …

Immunoinformatic approach for rational identification of immunogenic peptides against host entry and/or exit Mpox proteins and potential multiepitope vaccine …

LP de Araújo, NC de Melo Santos… - The Journal of …, 2024 - academic.oup.com
COVID-19 has intensified humanity's concern about the emergence of new pandemics.
Since 2018, epidemic outbreaks of the mpox virus have become worrisome. In June 2022 …

[PDF][PDF] From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

L Perez de Souza, T Naake, T Tohge, AR Fernie - Gigascience, 2017 - academic.oup.com
The grand challenge currently facing metabolomics is the expansion of the coverage of the
metabolome from a minor percentage of the metabolic complement of the cell toward the …

A combinatorial approach to the peptide feature matching problem for label-free quantification

H Lin, L He, B Ma - Bioinformatics, 2013 - academic.oup.com
Motivation: Label-free quantification is an important approach to identify biomarkers, as it
measures the quantity change of peptides across different biological samples. One of the …

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis

KR Pomraning, S Wei, SA Karagiosis, YM Kim… - PLoS …, 2015 - journals.plos.org
Yarrowia lipolytica is an oleaginous ascomycete yeast that accumulates large amounts of
lipids and has potential as a biofuel producing organism. Despite a growing scientific …