Integrated analysis of transcriptomic and proteomic data
Until recently, understanding the regulatory behavior of cells has been pursued through
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …
Candidate gene association studies: a comprehensive guide to useful in silicotools
The candidate gene approach has been a pioneer in the field of genetic epidemiology,
identifying risk alleles and their association with clinical traits. With the advent of rapidly …
identifying risk alleles and their association with clinical traits. With the advent of rapidly …
Sox9 and NFIA coordinate a transcriptional regulatory cascade during the initiation of gliogenesis
Transcriptional cascades that operate over the course of lineage development are
fundamental mechanisms that control cellular differentiation. In the developing central …
fundamental mechanisms that control cellular differentiation. In the developing central …
Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma
Recent studies have identified stem cells in brain cancer. However, their relationship to
normal CNS progenitors, including dependence on common lineage-restricted pathways, is …
normal CNS progenitors, including dependence on common lineage-restricted pathways, is …
Mef2‐mediated transcription of the miR379–410 cluster regulates activity‐dependent dendritogenesis by fine‐tuning Pumilio2 protein levels
R Fiore, S Khudayberdiev, M Christensen… - The EMBO …, 2009 - embopress.org
Neuronal activity orchestrates the proper development of the neuronal circuitry by regulating
both transcriptional and post‐transcriptional gene expression programmes. How these …
both transcriptional and post‐transcriptional gene expression programmes. How these …
The next generation of transcription factor binding site prediction
A Mathelier, WW Wasserman - PLoS computational biology, 2013 - journals.plos.org
Finding where transcription factors (TFs) bind to the DNA is of key importance to decipher
gene regulation at a transcriptional level. Classically, computational prediction of TF binding …
gene regulation at a transcriptional level. Classically, computational prediction of TF binding …
DBD: a transcription factor prediction database
SK Kummerfeld, SA Teichmann - Nucleic acids research, 2006 - academic.oup.com
Regulation of gene expression influences almost all biological processes in an organism;
sequence-specific DNA-binding transcription factors are critical to this control. For most …
sequence-specific DNA-binding transcription factors are critical to this control. For most …
Mechanistic evaluation of primary human hepatocyte culture using global proteomic analysis reveals a selective dedifferentiation profile
JA Heslop, C Rowe, J Walsh, R Sison-Young… - Archives of …, 2017 - Springer
The application of primary human hepatocytes following isolation from human tissue is well
accepted to be compromised by the process of dedifferentiation. This phenomenon reduces …
accepted to be compromised by the process of dedifferentiation. This phenomenon reduces …
Activation of MAPK pathways due to DUSP4 loss promotes cancer stem cell-like phenotypes in basal-like breast cancer
JM Balko, LJ Schwarz, NE Bhola, R Kurupi, P Owens… - Cancer research, 2013 - AACR
Basal-like breast cancer (BLBC) is an aggressive disease that lacks a clinically approved
targeted therapy. Traditional chemotherapy is effective in BLBC, but it spares the cancer …
targeted therapy. Traditional chemotherapy is effective in BLBC, but it spares the cancer …
Blocking interferon γ reduces expression of chemokines CXCL9, CXCL10 and CXCL11 and decreases macrophage infiltration in ex vivo cultured arteries from …
M Corbera-Bellalta, E Planas-Rigol… - Annals of the …, 2016 - ard.bmj.com
Background Interferon γ (IFNγ) is considered a seminal cytokine in the pathogenesis of giant
cell arteritis (GCA), but its functional role has not been investigated. We explored changes in …
cell arteritis (GCA), but its functional role has not been investigated. We explored changes in …