Integrated analysis of transcriptomic and proteomic data

S Haider, R Pal - Current genomics, 2013 - ingentaconnect.com
Until recently, understanding the regulatory behavior of cells has been pursued through
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …

Candidate gene association studies: a comprehensive guide to useful in silicotools

R Patnala, J Clements, J Batra - BMC genetics, 2013 - Springer
The candidate gene approach has been a pioneer in the field of genetic epidemiology,
identifying risk alleles and their association with clinical traits. With the advent of rapidly …

Sox9 and NFIA coordinate a transcriptional regulatory cascade during the initiation of gliogenesis

P Kang, HK Lee, SM Glasgow, M Finley, T Donti… - Neuron, 2012 - cell.com
Transcriptional cascades that operate over the course of lineage development are
fundamental mechanisms that control cellular differentiation. In the developing central …

Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma

KL Ligon, E Huillard, S Mehta, S Kesari, H Liu… - Neuron, 2007 - cell.com
Recent studies have identified stem cells in brain cancer. However, their relationship to
normal CNS progenitors, including dependence on common lineage-restricted pathways, is …

Mef2‐mediated transcription of the miR379–410 cluster regulates activity‐dependent dendritogenesis by fine‐tuning Pumilio2 protein levels

R Fiore, S Khudayberdiev, M Christensen… - The EMBO …, 2009 - embopress.org
Neuronal activity orchestrates the proper development of the neuronal circuitry by regulating
both transcriptional and post‐transcriptional gene expression programmes. How these …

The next generation of transcription factor binding site prediction

A Mathelier, WW Wasserman - PLoS computational biology, 2013 - journals.plos.org
Finding where transcription factors (TFs) bind to the DNA is of key importance to decipher
gene regulation at a transcriptional level. Classically, computational prediction of TF binding …

DBD: a transcription factor prediction database

SK Kummerfeld, SA Teichmann - Nucleic acids research, 2006 - academic.oup.com
Regulation of gene expression influences almost all biological processes in an organism;
sequence-specific DNA-binding transcription factors are critical to this control. For most …

Mechanistic evaluation of primary human hepatocyte culture using global proteomic analysis reveals a selective dedifferentiation profile

JA Heslop, C Rowe, J Walsh, R Sison-Young… - Archives of …, 2017 - Springer
The application of primary human hepatocytes following isolation from human tissue is well
accepted to be compromised by the process of dedifferentiation. This phenomenon reduces …

Activation of MAPK pathways due to DUSP4 loss promotes cancer stem cell-like phenotypes in basal-like breast cancer

JM Balko, LJ Schwarz, NE Bhola, R Kurupi, P Owens… - Cancer research, 2013 - AACR
Basal-like breast cancer (BLBC) is an aggressive disease that lacks a clinically approved
targeted therapy. Traditional chemotherapy is effective in BLBC, but it spares the cancer …

Blocking interferon γ reduces expression of chemokines CXCL9, CXCL10 and CXCL11 and decreases macrophage infiltration in ex vivo cultured arteries from …

M Corbera-Bellalta, E Planas-Rigol… - Annals of the …, 2016 - ard.bmj.com
Background Interferon γ (IFNγ) is considered a seminal cytokine in the pathogenesis of giant
cell arteritis (GCA), but its functional role has not been investigated. We explored changes in …