Frontiers in molecular dynamics simulations of DNA
It has been known for decades that DNA is extremely flexible and polymorphic, but our
knowledge of its accessible conformational space remains limited. Structural data, primarily …
knowledge of its accessible conformational space remains limited. Structural data, primarily …
RNA folding: conformational statistics, folding kinetics, and ion electrostatics
SJ Chen - Annu. Rev. Biophys., 2008 - annualreviews.org
RNA folding is a remarkably complex problem that involves ion-mediated electrostatic
interaction, conformational entropy, base pairing and stacking, and noncanonical …
interaction, conformational entropy, base pairing and stacking, and noncanonical …
Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor
Single-molecule measurements of biomolecules can provide information about the
molecular interactions and kinetics that are hidden in ensemble measurements. However …
molecular interactions and kinetics that are hidden in ensemble measurements. However …
Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins
MT Woodside, WM Behnke-Parks… - Proceedings of the …, 2006 - National Acad Sciences
Nucleic acid hairpins provide a powerful model system for probing the formation of
secondary structure. We report a systematic study of the kinetics and thermodynamics of the …
secondary structure. We report a systematic study of the kinetics and thermodynamics of the …
Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
L Ying, JJ Green, H Li, D Klenerman… - Proceedings of the …, 2003 - National Acad Sciences
We have investigated the structure and unfolding kinetics of the human telomeric
intramolecular G quadruplex by using single-molecule fluorescence resonance energy …
intramolecular G quadruplex by using single-molecule fluorescence resonance energy …
[PDF][PDF] Remotely triggered release from magnetic nanoparticles
AM Derfus, G von Maltzahn, TJ Harris, T Duza… - Advanced …, 2007 - academia.edu
Multivalent nanoparticles have tremendous potential in the diagnosis and treatment of
human disease.[1] Their multivalency allows simultaneous conjugation of targeting ligands …
human disease.[1] Their multivalency allows simultaneous conjugation of targeting ligands …
[HTML][HTML] Folding and unfolding pathways of the human telomeric G-quadruplex
RD Gray, JO Trent, JB Chaires - Journal of molecular biology, 2014 - Elsevier
Sequence analogs of human telomeric DNA such as d [AGGG (TTAGGG) 3](Tel22) fold into
monomeric quadruplex structures in the presence of a suitable cation. To investigate the …
monomeric quadruplex structures in the presence of a suitable cation. To investigate the …
Effects of temperature and molecular weight on dissolution of cellulose in NaOH/urea aqueous solution
H Qi, C Chang, L Zhang - Cellulose, 2008 - Springer
Dissolution of cellulose having different viscosity-average molecular weight (M η) in 7 wt%
NaOH/12 wt% urea aqueous solution at temperature from 60 to− 12.6° C was investigated …
NaOH/12 wt% urea aqueous solution at temperature from 60 to− 12.6° C was investigated …
Defining the sequence-recognition profile of DNA-binding molecules
CL Warren, NCS Kratochvil… - Proceedings of the …, 2006 - National Acad Sciences
Determining the sequence-recognition properties of DNA-binding proteins and small
molecules remains a major challenge. To address this need, we have developed a high …
molecules remains a major challenge. To address this need, we have developed a high …
Compact intermediates in RNA folding
SA Woodson - Annual review of biophysics, 2010 - annualreviews.org
Large noncoding RNAs fold into their biologically functional structures via compact yet
disordered intermediates, which couple the stable secondary structure of the RNA with the …
disordered intermediates, which couple the stable secondary structure of the RNA with the …