Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding
H Ando, H Mukai, T Komura, T Dewi… - Environmental …, 2020 - Wiley Online Library
Fine‐scale estimation of trophic interactions is an important subject in the field of ecology.
Diet analysis based on fecal DNA metabarcoding has been accepted as a noninvasive …
Diet analysis based on fecal DNA metabarcoding has been accepted as a noninvasive …
Promises and pitfalls of using high‐throughput sequencing for diet analysis
The application of high‐throughput sequencing‐based approaches to DNA extracted from
environmental samples such as gut contents and faeces has become a popular tool for …
environmental samples such as gut contents and faeces has become a popular tool for …
An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data
LE Drake, JP Cuff, RE Young… - Methods in Ecology …, 2022 - Wiley Online Library
Metabarcoding provides a powerful tool for investigating biodiversity and trophic
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …
DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
M De Barba, C Miquel, F Boyer… - Molecular ecology …, 2014 - Wiley Online Library
Ecological understanding of the role of consumer–resource interactions in natural food webs
is limited by the difficulty of accurately and efficiently determining the complex variety of food …
is limited by the difficulty of accurately and efficiently determining the complex variety of food …
Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis
M Galan, JB Pons, O Tournayre, E Pierre… - Molecular ecology …, 2018 - Wiley Online Library
Assessing diet variability is of main importance to better understand the biology of bats and
design conservation strategies. Although the advent of metabarcoding has facilitated such …
design conservation strategies. Although the advent of metabarcoding has facilitated such …
Current methods and future directions in avian diet analysis
Identifying the composition of avian diets is a critical step in characterizing the roles of birds
within ecosystems. However, because birds are a diverse taxonomic group with equally …
within ecosystems. However, because birds are a diverse taxonomic group with equally …
Persistence of DNA in carcasses, slime and avian feces may affect interpretation of environmental DNA data
CM Merkes, SG McCalla, NR Jensen, MP Gaikowski… - PLoS …, 2014 - journals.plos.org
The prevention of non-indigenous aquatic invasive species spreading into new areas is a
goal of many resource managers. New techniques have been developed to survey for …
goal of many resource managers. New techniques have been developed to survey for …
Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists
LP da Silva, VA Mata, PB Lopes… - Molecular Ecology …, 2019 - Wiley Online Library
The application of DNA metabarcoding to dietary analysis of trophic generalists requires
using multiple markers in order to overcome problems of primer specificity and bias …
using multiple markers in order to overcome problems of primer specificity and bias …
The future of environmental DNA in ecology
NG Yoccoz - Molecular ecology, 2012 - Wiley Online Library
The contributions of environmental DNA to ecology are reviewed, focusing on diet, trophic
interactions, species distributions and biodiversity assessment. Environmental DNA has the …
interactions, species distributions and biodiversity assessment. Environmental DNA has the …
Empirically characterising trophic networks: what emerging DNA-based methods, stable isotope and fatty acid analyses can offer
Food webs in agricultural systems are complex and trophic linkages are difficult to track
using conventional methodologies. Here, we review three alternative approaches that allow …
using conventional methodologies. Here, we review three alternative approaches that allow …