Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
Genotype imputation methods and their effects on genomic predictions in cattle
In this study, we reviewed six imputation methods (Impute 2, FImpute 2.2, Beagle 4.1,
Beagle 3.3. 2, MaCH, and Bimbam) and evaluated the accuracy of imputation from …
Beagle 3.3. 2, MaCH, and Bimbam) and evaluated the accuracy of imputation from …
[HTML][HTML] The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa
Cost-effective high-density (HD) genotypes of livestock species can be obtained by
genotyping a proportion of the population using a HD panel and the remainder using a …
genotyping a proportion of the population using a HD panel and the remainder using a …
Genomic predictions for resistance to Aeromonas hydrophila in pacu (Piaractus mesopotamicus)
SCS Manso, BF Garcia, VA Mastrochirico-Filho… - Aquaculture, 2024 - Elsevier
Infections caused by the bacterium Aeromonas hydrophila result in high mortality outbreaks
in pacu (Piaractus mesopotamicus) production. An alternative to increase the resistance to …
in pacu (Piaractus mesopotamicus) production. An alternative to increase the resistance to …
Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
Background Genotype imputation is a key element of the implementation of genomic
selection within the New Zealand sheep industry, but many factors can influence imputation …
selection within the New Zealand sheep industry, but many factors can influence imputation …
Empirical determination of breed-of-origin of alleles in three-breed cross pigs
Background Although breeding programs for pigs and poultry aim at improving crossbred
performance, they mainly use training populations that consist of purebred animals. For …
performance, they mainly use training populations that consist of purebred animals. For …
Accuracy of genome-wide imputation in Braford and Hereford beef cattle
Background Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-
BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to …
BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to …
Accuracy of imputation of single nucleotide polymorphism marker genotypes from low‐density panels in J apanese B lack cattle
S Ogawa, H Matsuda, Y Taniguchi… - Animal Science …, 2016 - Wiley Online Library
Using target and reference fattened steer populations, the performance of genotype
imputation using lower‐density marker panels in J apanese B lack cattle was evaluated …
imputation using lower‐density marker panels in J apanese B lack cattle was evaluated …
Design of low density SNP chips for genotype imputation in layer chicken
F Herry, F Hérault, D Picard Druet, A Varenne, T Burlot… - BMC genetics, 2018 - Springer
Background The main goal of selection is to achieve genetic gain for a population by
choosing the best breeders among a set of selection candidates. Since 2013, the use of a …
choosing the best breeders among a set of selection candidates. Since 2013, the use of a …
Strategies for genotype imputation in composite beef cattle
Background Genotype imputation has been used to increase genomic information, allow
more animals in genome-wide analyses, and reduce genotyping costs. In Brazilian beef …
more animals in genome-wide analyses, and reduce genotyping costs. In Brazilian beef …