Single-cell transcriptomics provides researchers with a powerful tool to resolve the
transcriptome heterogeneity of individual cells. However, this method falls short in revealing …

Microarrays have become a routine tool for biomedical research. Data quality assessment is
an essential part of the analysis, but it is still not easy to perform objectively or in an …

We report the immediate effects of estrogen signaling on the transcriptome of breast cancer
cells using global run-on and sequencing (GRO-seq). The data were analyzed using a new …

Abstract The ArrayExpress Archive of Functional Genomics Data (http://www. ebi. ac.
uk/arrayexpress) is one of three international functional genomics public data repositories …

Screening new compounds for potential bioactivities against cellular targets is vital for drug
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …

Abstract The ArrayExpress Archive (http://www. ebi. ac. uk/arrayexpress) is one of the three
international public repositories of functional genomics data supporting publications. It …

Transcriptome profiling followed by differential gene expression analysis often leads to lists
of genes that are hard to analyze and interpret. Functional genomics tools are powerful …

This article introduces a manually curated data collection for gene expression meta-analysis
of patients with ovarian cancer and software for reproducible preparation of similar …

In recent decades, increasing longevity (among other factors) has fostered a rise in
Parkinson's disease incidence. Although not exhaustively studied in this devastating …

Endothelial cells represent major effectors in inflammation and angiogenesis, processes that
drive a multitude of pathological states such as atherosclerosis and cancer. Both …