Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
GMNN2CD: identification of circRNA–disease associations based on variational inference and graph Markov neural networks
Motivation With the analysis of the characteristic and function of circular RNAs (circRNAs),
people have realized that they play a critical role in the diseases. Exploring the relationship …
people have realized that they play a critical role in the diseases. Exploring the relationship …
An efficient approach based on multi-sources information to predict circRNA–disease associations using deep convolutional neural network
Motivation Emerging evidence indicates that circular RNA (circRNA) plays a crucial role in
human disease. Using circRNA as biomarker gives rise to a new perspective regarding our …
human disease. Using circRNA as biomarker gives rise to a new perspective regarding our …
MGRCDA: Metagraph recommendation method for predicting circRNA–disease association
Clinical evidence began to accumulate, suggesting that circRNAs can be novel therapeutic
targets for various diseases and play a critical role in human health. However, limited by the …
targets for various diseases and play a critical role in human health. However, limited by the …
IMS-CDA: prediction of CircRNA-disease associations from the integration of multisource similarity information with deep stacked autoencoder model
Emerging evidence indicates that circular RNA (circRNA) has been an indispensable role in
the pathogenesis of human complex diseases and many critical biological processes. Using …
the pathogenesis of human complex diseases and many critical biological processes. Using …
[HTML][HTML] Extracellular Vesicles Produced by the Probiotic Propionibacterium freudenreichii CIRM-BIA 129 Mitigate Inflammation by Modulating the NF-κB Pathway
Extracellular vesicles (EVs) are nanometric spherical structures involved in intercellular
communication, whose production is considered to be a widespread phenomenon in living …
communication, whose production is considered to be a widespread phenomenon in living …
Computational network inference for bacterial interactomics
K James, J Muñoz-Muñoz - Msystems, 2022 - Am Soc Microbiol
Since the large-scale experimental characterization of protein–protein interactions (PPIs) is
not possible for all species, several computational PPI prediction methods have been …
not possible for all species, several computational PPI prediction methods have been …
THGNCDA: circRNA–disease association prediction based on triple heterogeneous graph network
Y Guo, M Yi - Briefings in Functional Genomics, 2024 - academic.oup.com
Circular RNAs (circRNAs) are a class of noncoding RNA molecules featuring a closed
circular structure. They have been proved to play a significant role in the reduction of many …
circular structure. They have been proved to play a significant role in the reduction of many …
Predicting protein–protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach
B Tian, X Wu, C Chen, W Qiu, Q Ma, B Yu - Journal of Theoretical Biology, 2019 - Elsevier
Research on protein–protein interactions (PPIs) not only helps to reveal the nature of life
activities but also plays a driving role in understanding the mechanisms of disease activity …
activities but also plays a driving role in understanding the mechanisms of disease activity …
[HTML][HTML] Functional annotation of hypothetical proteins from the Exiguobacterium antarcticum strain B7 reveals proteins involved in adaptation to extreme …
WLO da Costa, CLA Araújo, LM Dias, LCS Pereira… - PloS one, 2018 - journals.plos.org
Exiguobacterium antarcticum strain B7 is a psychrophilic Gram-positive bacterium that
possesses enzymes that can be used for several biotechnological applications. However …
possesses enzymes that can be used for several biotechnological applications. However …