Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

Plant responses to heat stress: physiology, transcription, noncoding RNAs, and epigenetics

J Zhao, Z Lu, L Wang, B Jin - International Journal of Molecular Sciences, 2020 - mdpi.com
Global warming has increased the frequency of extreme high temperature events. High
temperature is a major abiotic stress that limits the growth and production of plants …

psRNATarget: a plant small RNA target analysis server (2017 release)

X Dai, Z Zhuang, PX Zhao - Nucleic acids research, 2018 - academic.oup.com
Plant regulatory small RNAs (sRNAs), which include most microRNAs (miRNAs) and a
subset of small interfering RNAs (siRNAs), such as the phased siRNAs (phasiRNAs), play …

Auxin response factors in plant adaptation to drought and salinity stress

S Verma, NP Negi, S Pareek, G Mudgal… - Physiologia …, 2022 - Wiley Online Library
Salinity and drought stresses affect plant growth worldwide and limit crop production. Auxin
is crucial in regulating plants' salinity and drought stress adaptative response. As a chemical …

The expanding world of small RNAs in plants

F Borges, RA Martienssen - Nature reviews Molecular cell biology, 2015 - nature.com
Plant genomes encode various small RNAs that function in distinct, yet overlapping, genetic
and epigenetic silencing pathways. However, the abundance and diversity of small-RNA …

Revisiting criteria for plant microRNA annotation in the era of big data

MJ Axtell, BC Meyers - The Plant Cell, 2018 - academic.oup.com
Abstract MicroRNAs (miRNAs) are∼ 21-nucleotide-long regulatory RNAs that arise from
endonucleolytic processing of hairpin precursors. Many function as essential …

Long noncoding RNAs in plants

AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …

A Phytophthora effector suppresses trans-kingdom RNAi to promote disease susceptibility

Y Hou, YI Zhai, LI Feng, HZ Karimi, BD Rutter, L Zeng… - Cell host & …, 2019 - cell.com
RNA silencing (RNAi) has a well-established role in anti-viral immunity in plants. The
destructive eukaryotic pathogen Phytophthora encodes suppressors of RNAi (PSRs), which …

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

A Stief, S Altmann, K Hoffmann, BD Pant… - The Plant …, 2014 - academic.oup.com
Plants are sessile organisms that gauge stressful conditions to ensure survival and
reproductive success. While plants in nature often encounter chronic or recurring stressful …

Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …