Nanopore sequencing for detecting reciprocal translocation carrier status in preimplantation genetic testing

Q Xia, S Li, T Ding, Z Liu, J Liu, Y Li, H Zhu, Z Yao - BMC genomics, 2023 - Springer
Background Balanced reciprocal translocation (BRT) is one of the most common
chromosomal abnormalities that causes infertility, recurrent miscarriage, and birth defects …

The tale of an endemic shrimp's exceptional osmoregulation and the ancient Athalassic mangrove oasis

BW Giraldes, S Boughattas, FM Benslimane… - Scientific Reports, 2024 - nature.com
The hyperarid mangrove in the Middle East is characterised by the absence of rivers or
freshwater inputs and is one of the most extreme settings of this ecosystem on Earth …

Rapid PCR-based nanopore adaptive sequencing improves sensitivity and timeliness of viral clinical detection and genome surveillance

Y Lin, Y Dai, Y Liu, Z Ren, H Guo, Z Li, J Li… - Frontiers in …, 2022 - frontiersin.org
Nanopore sequencing has been widely used for the real-time detection and surveillance of
pathogens with portable MinION. Nanopore adaptive sequencing can enrich on-target …

The genomics in emerging marine systems checklist for clear and reproducible genomics in emerging, marine systems

R Varney - Integrative and Comparative Biology, 2023 - academic.oup.com
Genome sequencing becomes more accessible and powerful every year, but there is a lack
of consensus on what information should be provided in publications that include genomic …

Genomic DNA extraction optimization and validation for genome sequencing using the marine gastropod Kellet's whelk

BN Daniels, J Nurge, O Sleeper, A Lee, C López… - PeerJ, 2023 - peerj.com
Next-generation sequencing technologies, such as Nanopore MinION, Illumina Hiseq and
Novaseq, and PacBio Sequel II, hold immense potential for advancing genomic research on …

Comparative genomics reveals the dynamic evolutionary history of cement protein genes of barnacles from intertidal to deep‐sea hydrothermal vents

WK Lee, BKK Chan, JY Kim, SJ Ju… - Molecular Ecology …, 2024 - Wiley Online Library
Thoracican barnacles are a diverse group of marine organisms for which the availability of
genome assemblies is currently limited. In this study, we sequenced the genomes of two …

[HTML][HTML] Molecular investigation of waterborne protozoan contamination using marine Demospongiae

S Boughattas, A Al-Khater, D Albatesh, BW Giraldes… - Ecological …, 2024 - Elsevier
Sponges play important role within aquatic ecosystems due to their diverse abilities
including filter-based feeding mechanisms. Hence, this study evaluated the potential use of …

Application of nanopore adaptive sequencing in pathogen detection of a patient with Chlamydia psittaci infection

Y Lin, Y Dai, S Zhang, H Guo, L Yang, J Li… - Frontiers in Cellular …, 2023 - frontiersin.org
Introduction Nanopore sequencing has been widely used in clinical metagenomic
sequencing for pathogen detection with high portability and real-time sequencing. Oxford …

Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing

M Liem, T Regensburg-Tuïnk, C Henkel, H Jansen… - BMC Research …, 2021 - Springer
Objective Currently the majority of non-culturable microbes in sea water are yet to be
discovered, Nanopore offers a solution to overcome the challenging tasks to identify the …

[PDF][PDF] Genomics applications of nanopore long-read sequencing for small to large sized genomes

M Liem - 2024 - scholarlypublications …
We have sequenced the genome of the endangered European eel using the MinION by
Oxford Nanopore, and assembled these data using a novel algorithm specifically designed …