Landmarks in the history of selective sweeps

M Panigrahi, D Rajawat, SS Nayak, K Ghildiyal… - Animal …, 2023 - Wiley Online Library
Half a century ago, a seminal article on the hitchhiking effect by Smith and Haigh
inaugurated the concept of the selection signature. Selective sweeps are characterised by …

Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes

P Flegontov, U Işıldak, R Maier, E Yüncü… - PloS …, 2023 - journals.plos.org
f-statistics have emerged as a first line of analysis for making inferences about demographic
history from genome-wide data. Not only are they guaranteed to allow robust tests of the fits …

Testing the generalizability of ancestry-specific polygenic risk scores to predict prostate cancer in sub-Saharan Africa

MS Kim, D Naidoo, U Hazra, MH Quiver, WC Chen… - Genome biology, 2022 - Springer
Background Genome-wide association studies do not always replicate well across
populations, limiting the generalizability of polygenic risk scores (PRS). Despite higher …

A framework for research into continental ancestry groups of the UK Biobank

AE Constantinescu, RE Mitchell, J Zheng, CJ Bull… - Human genomics, 2022 - Springer
Abstract Background The UK Biobank is a large prospective cohort, based in the UK, that
has deep phenotypic and genomic data on roughly a half a million individuals. Included in …

Integrated approach in genomic selection to accelerate genetic gain in sugarcane

KS Sandhu, A Shiv, G Kaur, MR Meena, AK Raja… - Plants, 2022 - mdpi.com
Marker-assisted selection (MAS) has been widely used in the last few decades in plant
breeding programs for the mapping and introgression of genes for economically important …

A multibreed genome-wide association study for cattle leukocyte telomere length

AV Igoshin, NS Yudin, GA Romashov, DM Larkin - Genes, 2023 - mdpi.com
Telomeres are terminal DNA regions of chromosomes that prevent chromosomal fusion and
degradation during cell division. In cattle, leukocyte telomere length (LTL) is associated with …

Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout

S Liu, KE Martin, WM Snelling, R Long… - G3: Genes …, 2024 - academic.oup.com
With the rapid and significant cost reduction of next-generation sequencing, low-coverage
whole-genome sequencing (lcWGS), followed by genotype imputation, is becoming a cost …

Exploring the diversity and genetic structure of the US National Cultivated Strawberry Collection

JD Zurn, KE Hummer, NV Bassil - Horticulture Research, 2022 - academic.oup.com
The cultivated strawberry (Fragaria× ananassa) arose through a hybridization of two wild
American octoploid strawberry species in a French garden in the 1750s. Since then …

Design and performance of a bovine 200 k SNP chip developed for endangered German Black Pied cattle (DSN)

GB Neumann, P Korkuć, D Arends, MJ Wolf, K May… - BMC genomics, 2021 - Springer
Abstract Background German Black Pied cattle (DSN) are an endangered dual-purpose
breed which was largely replaced by Holstein cattle due to their lower milk yield. DSN cattle …