Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation

S Konur, L Mierla, H Fellermann, C Ladroue… - ACS Synthetic …, 2021 - ACS Publications
We present the Infobiotics Workbench (IBW), a user-friendly, scalable, and integrated
computational environment for the computer-aided design of synthetic biological systems. It …

Verifiable biology

S Konur, M Gheorghe… - Journal of the Royal …, 2023 - royalsocietypublishing.org
The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …

Spiking neural P systems: matrix representation and formal verification

M Gheorghe, R Lefticaru, S Konur, IM Niculescu… - Journal of Membrane …, 2021 - Springer
Structural and behavioural properties of models are very important in development of
complex systems and applications. In this paper, we investigate such properties for some …

A survey of software engineering best practices for the development of smart applications in ambient intelligence

D Preuveneers, P Novais - Journal of Ambient Intelligence …, 2012 - content.iospress.com
Over the past decade, the world of Ambient Intelligence and smart environments has
brought us a wide variety of novel applications with potential for exhibiting sophisticated …

[HTML][HTML] kPWorkbench: A software suit for membrane systems

S Konur, L Mierlă, F Ipate, M Gheorghe - SoftwareX, 2020 - Elsevier
Membrane computing is a new natural computing paradigm inspired by the functioning and
structure of biological cells, and has been successfully applied to many different areas, from …

Review of challenges, requirements, and approaches of pervasive computing system evaluation

B Abdulrazak, Y Malik - IETE Technical Review, 2012 - Taylor & Francis
Performance evaluation process identifies direction for future research and development.
Tremendous efforts have been invested in the related research; however, no standard or …

Formal verification of a pervasive messaging system

S Konur, M Fisher, S Dobson, S Knox - Formal Aspects of Computing, 2014 - Springer
As ubiquitous computing becomes a reality, its applications are increasingly being used in
business-critical, mission-critical and even in safety-critical, areas. Such systems must …

[HTML][HTML] Search-based testing in membrane computing

A Ţurlea, M Gheorghe, F Ipate, S Konur - Journal of Membrane Computing, 2019 - Springer
Search-based testing is widely used for generating test sets. It is also applied in the case of
model-based testing, especially for (extended) finite state machines. In this paper, we define …

Automated log analysis and anomaly detection using machine learning

AH Shah, D Pasha, EH Zadeh… - Fuzzy Systems and Data …, 2022 - ebooks.iospress.nl
Reducing the number of alerts and anomalies has been the focus of several studies, but an
automated anomaly detection using log files is still an ongoing challenge. One of the …

Formal analysis of pervasive computing systems

Y Liu, X Zhang, JS Dong, Y Liu, J Sun… - 2012 IEEE 17th …, 2012 - ieeexplore.ieee.org
Pervasive computing systems are heterogenous and complex as they usually involve
human activities, various sensors and actuators as well as middleware for system …