Liquid biopsy, ctDNA diagnosis through NGS

C Lin, X Liu, B Zheng, R Ke, CM Tzeng - Life, 2021 - mdpi.com
Liquid biopsy with circulating tumor DNA (ctDNA) profiling by next-generation sequencing
holds great promise to revolutionize clinical oncology. It relies on the basis that ctDNA …

The practicality of the use of liquid biopsy in early diagnosis and treatment monitoring of oral cancer in resource-limited settings

HA Adeola, IO Bello, RT Aruleba, NM Francisco… - Cancers, 2022 - mdpi.com
Simple Summary Mouth cancer often results in poor outcomes and requires the use of state-
of-the-art medical approaches to make its detection easy, individualized, and early. Liquid …

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

E Aparicio-Puerta, R Lebrón, A Rueda… - Nucleic acids …, 2019 - academic.oup.com
Since the original publication of sRNAtoolbox in 2015, small RNA research experienced
notable advances in different directions. New protocols for small RNA sequencing have …

isomiRdb: microRNA expression at isoform resolution

E Aparicio-Puerta, P Hirsch, GP Schmartz… - Nucleic Acids …, 2023 - academic.oup.com
A significant fraction of mature miRNA transcripts carries sequence and/or length variations,
termed isomiRs. IsomiRs are differentially abundant in cell types, tissues, body fluids or …

EV-transported microRNAs of Schistosoma mansoni and Fasciola hepatica: Potential targets in definitive hosts

VY Ovchinnikov, EV Kashina, VA Mordvinov… - Infection, Genetics and …, 2020 - Elsevier
Trematodes are widespread parasitic flatworms that significantly affect mankind either
directly as human parasites, or indirectly via the infection of livestock and the related …

mirnaQC: a webserver for comparative quality control of miRNA-seq data

E Aparicio-Puerta, C Gómez-Martín… - Nucleic acids …, 2020 - academic.oup.com
Although miRNA-seq is extensively used in many different fields, its quality control is
frequently restricted to a PhredScore-based filter. Other important quality related aspects like …

cfOmics: a cell-free multi-Omics database for diseases

M Li, T Zhou, M Han, H Wang, P Bao… - Nucleic Acids …, 2024 - academic.oup.com
Liquid biopsy has emerged as a promising non-invasive approach for detecting, monitoring
diseases, and predicting their recurrence. However, the effective utilization of liquid biopsy …

[HTML][HTML] The role of miR-320 in glucose and lipid metabolism disorder-associated diseases

H Du, Y Zhao, Z Yin, DW Wang… - International Journal of …, 2021 - ncbi.nlm.nih.gov
Glucose and lipids are important nutrients that provide the majority of energy for each organ
to maintain homeostasis of the body. With the continuous improvement in living standards …

Circulating miRNAs as novel non-invasive biomarkers to aid the early diagnosis of suspicious breast lesions for which biopsy is recommended

M Giussani, CM Ciniselli, L De Cecco, M Lecchi… - Cancers, 2021 - mdpi.com
Simple Summary In population-based screens, tissue biopsy remains the standard practice
for women with imaging that suggests breast cancer. We examined circulating microRNAs …

miR-Blood–a small RNA atlas of human blood components

J Jehn, F Trudzinski, R Horos, J Schenz, F Uhle… - Scientific Data, 2024 - nature.com
Abstract miR-Blood is a high-quality, small RNA expression atlas for the major components
of human peripheral blood (plasma, erythrocytes, thrombocytes, monocytes, neutrophils …