Challenges towards revitalizing hemp: A multifaceted crop
C Schluttenhofer, L Yuan - Trends in plant science, 2017 - cell.com
Hemp has been an important crop throughout human history for food, fiber, and medicine.
Despite significant progress made by the international research community, the basic …
Despite significant progress made by the international research community, the basic …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
Premise of the study: Using sequence data generated via target enrichment for
phylogenetics requires reassembly of high‐throughput sequence reads into loci, presenting …
phylogenetics requires reassembly of high‐throughput sequence reads into loci, presenting …
Genome sequences of horticultural plants: past, present, and future
Horticultural plants play various and critical roles for humans by providing fruits, vegetables,
materials for beverages, and herbal medicines and by acting as ornamentals. They have …
materials for beverages, and herbal medicines and by acting as ornamentals. They have …
Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs
EM Gardner, S Bruun-Lund… - Proceedings of the …, 2023 - National Acad Sciences
Studies investigating the evolution of flowering plants have long focused on isolating
mechanisms such as pollinator specificity. Some recent studies have proposed a role for …
mechanisms such as pollinator specificity. Some recent studies have proposed a role for …
Bridging the micro‐and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above
Reconstructing phylogenetic relationships at the micro‐and macroevoutionary levels within
the same tree is problematic because of the need to use different data types and analytical …
the same tree is problematic because of the need to use different data types and analytical …
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
Hybridization, incomplete lineage sorting, and phylogenetic error produce similar
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
The reduced cost of high‐throughput sequencing and the development of gene sets with
wide phylogenetic applicability has led to the rise of sequence capture methods as a …
wide phylogenetic applicability has led to the rise of sequence capture methods as a …
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla sl (Rosaceae)
DF Morales-Briones, B Gehrke, CH Huang… - Systematic …, 2022 - academic.oup.com
Target enrichment is becoming increasingly popular for phylogenomic studies. Although
baits for enrichment are typically designed to target single-copy genes, paralogs are often …
baits for enrichment are typically designed to target single-copy genes, paralogs are often …