Computational analysis of cancer genome sequencing data
Distilling biologically meaningful information from cancer genome sequencing data requires
comprehensive identification of somatic alterations using rigorous computational methods …
comprehensive identification of somatic alterations using rigorous computational methods …
Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics
GP McHugo, MJ Dover, DE MacHugh - BMC biology, 2019 - Springer
Animal domestication has fascinated biologists since Charles Darwin first drew the parallel
between evolution via natural selection and human-mediated breeding of livestock and …
between evolution via natural selection and human-mediated breeding of livestock and …
Centuries of genome instability and evolution in soft-shell clam, Mya arenaria, bivalve transmissible neoplasia
SFM Hart, MA Yonemitsu, RM Giersch, FES Garrett… - Nature Cancer, 2023 - nature.com
Transmissible cancers are infectious parasitic clones that metastasize to new hosts, living
past the death of the founder animal in which the cancer initiated. We investigated the …
past the death of the founder animal in which the cancer initiated. We investigated the …
Somatic evolution of marine transmissible leukemias in the common cockle, Cerastoderma edule
Transmissible cancers are malignant cell lineages that spread clonally between individuals.
Several such cancers, termed bivalve transmissible neoplasia (BTN), induce leukemia-like …
Several such cancers, termed bivalve transmissible neoplasia (BTN), induce leukemia-like …
The evolution of two transmissible cancers in Tasmanian devils
Tasmanian devils have spawned two transmissible cancer lineages, named devil facial
tumor 1 (DFT1) and devil facial tumor 2 (DFT2). We investigated the genetic diversity and …
tumor 1 (DFT1) and devil facial tumor 2 (DFT2). We investigated the genetic diversity and …
Arctic-adapted dogs emerged at the Pleistocene–Holocene transition
Although sled dogs are one of the most specialized groups of dogs, their origin and
evolution has received much less attention than many other dog groups. We applied a …
evolution has received much less attention than many other dog groups. We applied a …
Mutational spectrum of SARS-CoV-2 during the global pandemic
K Yi, SY Kim, T Bleazard, T Kim, J Youk… - Experimental & molecular …, 2021 - nature.com
Viruses accumulate mutations under the influence of natural selection and host–virus
interactions. Through a systematic comparison of 351,525 full viral genome sequences …
interactions. Through a systematic comparison of 351,525 full viral genome sequences …
A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe
MA Yonemitsu, RM Giersch, M Polo-Prieto, M Hammel… - Elife, 2019 - elifesciences.org
Transmissible cancers, in which cancer cells themselves act as an infectious agent, have
been identified in Tasmanian devils, dogs, and four bivalves. We investigated a …
been identified in Tasmanian devils, dogs, and four bivalves. We investigated a …
sigfit: flexible Bayesian inference of mutational signatures
K Gori, A Baez-Ortega - bioRxiv, 2018 - biorxiv.org
The premise of mutational signature analysis is that genomes acquire somatic mutations
through the collective action of discrete mutational processes, and its aim is to infer the …
through the collective action of discrete mutational processes, and its aim is to infer the …
Prevalence and polymorphism of a mussel transmissible cancer in Europe
Transmissible cancers are parasitic malignant cell lineages that have acquired the ability to
infect new hosts from the same species, or sometimes related species. First described in …
infect new hosts from the same species, or sometimes related species. First described in …