Clinical metagenomic next-generation sequencing for pathogen detection

W Gu, S Miller, CY Chiu - Annual Review of Pathology …, 2019 - annualreviews.org
Nearly all infectious agents contain DNA or RNA genomes, making sequencing an attractive
approach for pathogen detection. The cost of high-throughput or next-generation …

Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases

PJ Simner, S Miller, KC Carroll - Clinical Infectious Diseases, 2018 - academic.oup.com
Agnostic metagenomic next-generation sequencing (mNGS) has emerged as a promising
single, universal pathogen detection method for infectious disease diagnostics. This …

Clinical metagenomic sequencing for diagnosis of meningitis and encephalitis

MR Wilson, HA Sample, KC Zorn… - … England Journal of …, 2019 - Mass Medical Soc
Background Metagenomic next-generation sequencing (NGS) of cerebrospinal fluid (CSF)
has the potential to identify a broad range of pathogens in a single test. Methods In a 1-year …

High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

Chronic meningitis investigated via metagenomic next-generation sequencing

MR Wilson, BD O'Donovan, JM Gelfand… - JAMA …, 2018 - jamanetwork.com
Importance Identifying infectious causes of subacute or chronic meningitis can be
challenging. Enhanced, unbiased diagnostic approaches are needed. Objective To present …

Metagenomics for neurological infections—expanding our imagination

PS Ramachandran, MR Wilson - Nature Reviews Neurology, 2020 - nature.com
Over the past two decades, the diagnosis rate for patients with encephalitis has remained
poor despite advances in pathogen-specific testing such as PCR and antigen assays …

Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing

MI Ivy, MJ Thoendel, PR Jeraldo… - Journal of clinical …, 2018 - Am Soc Microbiol
Metagenomic shotgun sequencing has the potential to transform how serious infections are
diagnosed by offering universal, culture-free pathogen detection. This may be especially …

Clinical Evaluation of Diagnosis Efficacy of Active Mycobacterium tuberculosis Complex Infection via Metagenomic Next-Generation Sequencing of Direct Clinical …

X Zhou, H Wu, Q Ruan, N Jiang, X Chen… - Frontiers in cellular …, 2019 - frontiersin.org
Background: Tuberculosis (TB) is now the leading cause of death from infectious disease.
Rapid screening and diagnostic methods for TB are urgently required. Rapid development …

Point-counterpoint: should we be performing metagenomic next-generation sequencing for infectious disease diagnosis in the clinical laboratory?

S Miller, C Chiu, KG Rodino… - Journal of clinical …, 2020 - Am Soc Microbiol
INTRODUCTION With established applications of next-generation sequencing in inherited
diseases and oncology, clinical laboratories are evaluating the use of metagenomics for …

Clinical application and evaluation of metagenomic next-generation sequencing in suspected adult central nervous system infection

Y Zhang, P Cui, HC Zhang, HL Wu, MZ Ye… - Journal of translational …, 2020 - Springer
Background Accurate etiology diagnosis is crucial for central nervous system infections
(CNS infections). The diagnostic value of metagenomic next-generation sequencing …