Navigating the pitfalls of mapping DNA and RNA modifications
Y Kong, EA Mead, G Fang - Nature Reviews Genetics, 2023 - nature.com
Chemical modifications to nucleic acids occur across the kingdoms of life and carry
important regulatory information. Reliable high-resolution mapping of these modifications is …
important regulatory information. Reliable high-resolution mapping of these modifications is …
Epigenetic patterns in a complete human genome
The completion of a telomere-to-telomere human reference genome, T2T-CHM13, has
resolved complex regions of the genome, including repetitive and homologous regions …
resolved complex regions of the genome, including repetitive and homologous regions …
[HTML][HTML] Simultaneous sequencing of genetic and epigenetic bases in DNA
DNA comprises molecular information stored in genetic and epigenetic bases, both of which
are vital to our understanding of biology. Most DNA sequencing approaches address either …
are vital to our understanding of biology. Most DNA sequencing approaches address either …
[HTML][HTML] A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing
Oxford Nanopore sequencing can detect DNA methylations from ionic current signal of
single molecules, offering a unique advantage over conventional methods. Additionally …
single molecules, offering a unique advantage over conventional methods. Additionally …
[HTML][HTML] DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing
Long single-molecular sequencing technologies, such as PacBio circular consensus
sequencing (CCS) and nanopore sequencing, are advantageous in detecting DNA 5 …
sequencing (CCS) and nanopore sequencing, are advantageous in detecting DNA 5 …
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
W Zhou, BK Johnson, J Morrison… - Nucleic Acids …, 2024 - academic.oup.com
Data from both bulk and single-cell whole-genome DNA methylation experiments are under-
utilized in many ways. This is attributable to inefficient mapping of methylation sequencing …
utilized in many ways. This is attributable to inefficient mapping of methylation sequencing …
[HTML][HTML] High Resolution Analysis of DMPK Hypermethylation and Repeat Interruptions in Myotonic Dystrophy Type 1
Myotonic dystrophy type 1 (DM1) is a multisystemic neuromuscular disorder caused by the
expansion of a CTG repeat in the 3′-UTR of DMPK, which is transcribed to a toxic gain-of …
expansion of a CTG repeat in the 3′-UTR of DMPK, which is transcribed to a toxic gain-of …
[HTML][HTML] The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine
The MicroArray and Sequencing Quality Control (MAQC) consortium is a FDA-led,
community-wide effort to evaluate the use of genomic technologies in clinical applications …
community-wide effort to evaluate the use of genomic technologies in clinical applications …
A noninvasive method for whole-genome skin methylome profiling
C Banila, D Green, D Katsanos, J Viana… - British Journal of …, 2023 - academic.oup.com
Background Ageing, disease and malignant transformation of the skin are associated with
changes in DNA methylation. So far, mostly invasive methodologies such as biopsies have …
changes in DNA methylation. So far, mostly invasive methodologies such as biopsies have …
[HTML][HTML] OMICmAge: An integrative multi-omics approach to quantify biological age with electronic medical records
Biological aging is a multifactorial process involving complex interactions of cellular and
biochemical processes that is reflected in omic profiles. Using common clinical laboratory …
biochemical processes that is reflected in omic profiles. Using common clinical laboratory …