A fast, reproducible, high-throughput variant calling workflow for population genomics
CD Mirchandani, AJ Shultz… - Molecular Biology …, 2024 - academic.oup.com
The increasing availability of genomic resequencing data sets and high-quality reference
genomes across the tree of life present exciting opportunities for comparative population …
genomes across the tree of life present exciting opportunities for comparative population …
Revisiting the role of genetic variation in adaptation
Evolutionary biologists have thought about the role of genetic variation during adaptation for
a very long time—before we understood the organization of the genetic code, the …
a very long time—before we understood the organization of the genetic code, the …
Origin matters: Using a local reference genome improves measures in population genomics
DMJ Thorburn, K Sagonas… - Molecular ecology …, 2023 - Wiley Online Library
Genome sequencing enables answering fundamental questions about the genetic basis of
adaptation, population structure and epigenetic mechanisms. Yet, we usually need a …
adaptation, population structure and epigenetic mechanisms. Yet, we usually need a …
Investigating diadromy in fishes and its loss in an-omics era
ML Delgado, DE Ruzzante - Iscience, 2020 - cell.com
Diadromy, the predictable movements of individuals between marine and freshwater
environments, is biogeographically and phylogenetically widespread across fishes. Thus …
environments, is biogeographically and phylogenetically widespread across fishes. Thus …
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives
Parallel adaptation provides valuable insight into the predictability of evolutionary change
through replicated natural experiments. A steadily increasing number of studies have …
through replicated natural experiments. A steadily increasing number of studies have …
Parallel genetic evolution and speciation from standing variation
Adaptation often proceeds from standing variation, and natural selection acting on pairs of
populations is a quantitative continuum ranging from parallel to divergent. Yet, it is unclear …
populations is a quantitative continuum ranging from parallel to divergent. Yet, it is unclear …
Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish
Gene flow has tremendous importance for local adaptation, by influencing the fate of de
novo mutations, maintaining standing genetic variation and driving adaptive introgression …
novo mutations, maintaining standing genetic variation and driving adaptive introgression …
Reinventing the wheel? Reassessing the roles of gene flow, sorting and convergence in repeated evolution
JM Waters, GA McCulloch - Molecular Ecology, 2021 - Wiley Online Library
Biologists have long been intrigued by apparently predictable and repetitive evolutionary
trajectories inferred across a variety of lineages and systems. In recent years, high …
trajectories inferred across a variety of lineages and systems. In recent years, high …
Ecological diversification in an adaptive radiation of plants: the role of de novo mutation and introgression
BW Stone, CA Wessinger - Molecular Biology and Evolution, 2024 - academic.oup.com
Adaptive radiations are characterized by rapid ecological diversification and speciation
events, leading to fuzzy species boundaries between ecologically differentiated species …
events, leading to fuzzy species boundaries between ecologically differentiated species …
Selection on standing genetic variation mediates convergent evolution in extremophile fish
K Ryan, R Greenway, J Landers… - Molecular …, 2023 - Wiley Online Library
Hydrogen sulfide is a toxic gas that disrupts numerous biological processes, including
energy production in the mitochondria, yet fish in the Poecilia mexicana species complex …
energy production in the mitochondria, yet fish in the Poecilia mexicana species complex …