[HTML][HTML] Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2018 - ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Sharing the SAGA

D Helmlinger, L Tora - Trends in biochemical sciences, 2017 - cell.com
Transcription initiation is a major regulatory step in eukaryotic gene expression. Co-
activators establish transcriptionally competent promoter architectures and chromatin …

[HTML][HTML] Wheat microbiome bacteria can reduce virulence of a plant pathogenic fungus by altering histone acetylation

Y Chen, J Wang, N Yang, Z Wen, X Sun, Y Chai… - Nature …, 2018 - nature.com
Interactions between bacteria and fungi have great environmental, medical, and agricultural
importance, but the molecular mechanisms are largely unknown. Here, we study the …

[PDF][PDF] SAGA is a general cofactor for RNA polymerase II transcription

T Baptista, S Grünberg, N Minoungou, MJE Koster… - Molecular cell, 2017 - cell.com
Prior studies suggested that SAGA and TFIID are alternative factors that promote RNA
polymerase II transcription, with about 10% of genes in S. cerevisiae dependent on SAGA …

[PDF][PDF] Transcription of nearly all yeast RNA polymerase II-transcribed genes is dependent on transcription factor TFIID

L Warfield, S Ramachandran, T Baptista, D Devys… - Molecular cell, 2017 - cell.com
Previous studies suggested that expression of most yeast mRNAs is dominated by either
transcription factor TFIID or SAGA. We re-examined the role of TFIID by rapid depletion of S …

Structure of SAGA and mechanism of TBP deposition on gene promoters

G Papai, A Frechard, O Kolesnikova, C Crucifix… - Nature, 2020 - nature.com
Abstract SAGA (Spt–Ada–Gcn5–acetyltransferase) is a 19-subunit complex that stimulates
transcription via two chromatin-modifying enzymatic modules and by delivering the TATA …

Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA

R Donczew, L Warfield, D Pacheco, A Erijman, S Hahn - Elife, 2020 - elifesciences.org
Deletions within genes coding for subunits of the transcription coactivator SAGA caused
strong genome-wide defects in transcription and SAGA-mediated chromatin modifications. In …

[HTML][HTML] Structure of the human SAGA coactivator complex

DA Herbst, MN Esbin, RK Louder… - Nature structural & …, 2021 - nature.com
The SAGA complex is a regulatory hub involved in gene regulation, chromatin modification,
DNA damage repair and signaling. While structures of yeast SAGA (ySAGA) have been …

The SAGA chromatin-modifying complex: the sum of its parts is greater than the whole

JHM Soffers, JL Workman - Genes & Development, 2020 - genesdev.cshlp.org
There are many large protein complexes involved in transcription in a chromatin context.
However, recent studies on the SAGA coactivator complex are generating new paradigms …

Inhibition of histone acetyltransferase GCN5 by a transcription factor FgPacC controls fungal adaption to host-derived iron stress

Q Gu, Y Wang, X Zhao, B Yuan, M Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Poaceae plants can locally accumulate iron to suppress pathogen infection. It remains
unknown how pathogens overcome host-derived iron stress during their successful …