Tissue clearing and its applications in neuroscience

HR Ueda, A Ertürk, K Chung, V Gradinaru… - Nature Reviews …, 2020 - nature.com
State-of-the-art tissue-clearing methods provide subcellular-level optical access to intact
tissues from individual organs and even to some entire mammals. When combined with light …

Tissue clearing

DS Richardson, W Guan, K Matsumoto, C Pan… - Nature Reviews …, 2021 - nature.com
Tissue clearing of gross anatomical samples was first described more than a century ago
and has only recently found widespread use in the field of microscopy. This renaissance has …

[HTML][HTML] LABKIT: labeling and segmentation toolkit for big image data

M Arzt, J Deschamps, C Schmied, T Pietzsch… - Frontiers in computer …, 2022 - frontiersin.org
We present Labkit, a user-friendly Fiji plugin for the segmentation of microscopy image data.
It offers easy to use manual and automated image segmentation routines that can be rapidly …

Expansion microscopy: principles and uses in biological research

AT Wassie, Y Zhao, ES Boyden - Nature methods, 2019 - nature.com
Many biological investigations require 3D imaging of cells or tissues with nanoscale spatial
resolution. We recently discovered that preserved biological specimens can be physically …

LTP induction boosts glutamate spillover by driving withdrawal of perisynaptic astroglia

C Henneberger, L Bard, A Panatier, JP Reynolds… - Neuron, 2020 - cell.com
Extrasynaptic actions of glutamate are limited by high-affinity transporters expressed by
perisynaptic astroglial processes (PAPs): this helps maintain point-to-point transmission in …

Integration of optogenetics with complementary methodologies in systems neuroscience

CK Kim, A Adhikari, K Deisseroth - Nature Reviews Neuroscience, 2017 - nature.com
Modern optogenetics can be tuned to evoke activity that corresponds to naturally occurring
local or global activity in timing, magnitude or individual-cell patterning. This outcome has …

Protection of tissue physicochemical properties using polyfunctional crosslinkers

YG Park, CH Sohn, R Chen, M McCue, DH Yun… - Nature …, 2019 - nature.com
Understanding complex biological systems requires the system-wide characterization of
both molecular and cellular features. Existing methods for spatial mapping of biomolecules …

Depletion of microglia and inhibition of exosome synthesis halt tau propagation

H Asai, S Ikezu, S Tsunoda, M Medalla, J Luebke… - Nature …, 2015 - nature.com
Accumulation of pathological tau protein is a major hallmark of Alzheimer's disease. Tau
protein spreads from the entorhinal cortex to the hippocampal region early in the disease …

[HTML][HTML] Clarifying tissue clearing

DS Richardson, JW Lichtman - Cell, 2015 - cell.com
Biological specimens are intrinsically three dimensional; however, because of the obscuring
effects of light scatter, imaging deep into a tissue volume is problematic. Although efforts to …

Carbon nanomaterials for biological imaging and nanomedicinal therapy

G Hong, S Diao, AL Antaris, H Dai - Chemical reviews, 2015 - ACS Publications
Carbon nanomaterials are a class of low-dimensional materials that have aroused a great
deal of interest in the past 30 years since the spectacular debut of fullerene, the first member …