From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints
Elementary flux modes (EFMs) emerged as a formal concept to describe metabolic
pathways and have become an established tool for constraint-based modeling and …
pathways and have become an established tool for constraint-based modeling and …
Systems biology based metabolic engineering for non-natural chemicals
Production of chemicals in microorganisms is no longer restricted to products arising from
native metabolic potential. In this review, we highlight the evolution of metabolic engineering …
native metabolic potential. In this review, we highlight the evolution of metabolic engineering …
[图书][B] An introduction to computational systems biology: systems-level modelling of cellular networks
K Raman - 2021 - taylorfrancis.com
This book delivers a comprehensive and insightful account of applying mathematical
modelling approaches to very large biological systems and networks—a fundamental aspect …
modelling approaches to very large biological systems and networks—a fundamental aspect …
Green pathways: metabolic network analysis of plant systems
LM Dersch, V Beckers, C Wittmann - Metabolic engineering, 2016 - Elsevier
Metabolic engineering of plants with enhanced crop yield and value-added compositional
traits is particularly challenging as they probably exhibit the highest metabolic network …
traits is particularly challenging as they probably exhibit the highest metabolic network …
Minimizing enzyme mass to decompose flux distribution for identifying biologically relevant elementary flux modes
J Chen, Y Huang, C Zhong - Biosystems, 2023 - Elsevier
The flux distribution in metabolic network can be decomposed as non-negative linear
combinations of elementary flux modes (EFMs). Identifying biologically relevant EFM …
combinations of elementary flux modes (EFMs). Identifying biologically relevant EFM …
A scalable metabolite supplementation strategy against antibiotic resistant pathogen Chromobacterium violaceum induced by NAD+/NADH+ imbalance
Background The leading edge of the global problem of antibiotic resistance necessitates
novel therapeutic strategies. This study develops a novel systems biology driven approach …
novel therapeutic strategies. This study develops a novel systems biology driven approach …
Metabolic flux modeling of Gluconobacter oxydans enables improved production of bioleaching organic acids
Bioleaching with organic acids is an option for recovery of rare earth elements (REE) and or
other valuable metals from consumer or industrial wastes. Biohydrometallurgy can play an …
other valuable metals from consumer or industrial wastes. Biohydrometallurgy can play an …
Which sets of elementary flux modes form thermodynamically feasible flux distributions?
Elementary flux modes (EFMs) are non‐decomposable steady‐state fluxes through
metabolic networks. Every possible flux through a network can be described as a …
metabolic networks. Every possible flux through a network can be described as a …
In silico Design for Systems-Based Metabolic Engineering for the Bioconversion of Valuable Compounds From Industrial By-Products
AE Tafur Rangel, W Ríos, D Mejía, C Ojeda… - Frontiers in …, 2021 - frontiersin.org
Selecting appropriate metabolic engineering targets to build efficient cell factories
maximizing the bioconversion of industrial by-products to valuable compounds taking into …
maximizing the bioconversion of industrial by-products to valuable compounds taking into …
A hierarchy of metabolite exchanges in metabolic models of microbial species and communities
The metabolic network of an organism can be analyzed as a constraint-based model. This
analysis can be biased, optimizing an objective such as growth rate, or unbiased, aiming to …
analysis can be biased, optimizing an objective such as growth rate, or unbiased, aiming to …