[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …
molecules have led to substantial improvements in accuracy, read length and throughput …
[HTML][HTML] Advances and opportunities in RNA structure experimental determination and computational modeling
Beyond transferring genetic information, RNAs are molecules with diverse functions that
include catalyzing biochemical reactions and regulating gene expression. Most of these …
include catalyzing biochemical reactions and regulating gene expression. Most of these …
[HTML][HTML] Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing
Transfer RNAs (tRNAs) play a central role in protein translation. Studying them has been
difficult in part because a simple method to simultaneously quantify their abundance and …
difficult in part because a simple method to simultaneously quantify their abundance and …
Genomics in the long-read sequencing era
EL van Dijk, D Naquin, K Gorrichon, Y Jaszczyszyn… - Trends in Genetics, 2023 - cell.com
Long-read sequencing (LRS) technologies have provided extremely powerful tools to
explore genomes. While in the early years these methods suffered technical limitations, they …
explore genomes. While in the early years these methods suffered technical limitations, they …
[HTML][HTML] Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data
Nanopore sequencing provides signal data corresponding to the nucleotide motifs
sequenced. Through machine learning-based methods, these signals are translated into …
sequenced. Through machine learning-based methods, these signals are translated into …
Accurate expression quantification from nanopore direct RNA sequencing with NanoCount
Accurately quantifying gene and isoform expression changes is essential to understanding
cell functions, differentiation and disease. Sequencing full-length native RNAs using long …
cell functions, differentiation and disease. Sequencing full-length native RNAs using long …
[HTML][HTML] Single-molecule epitranscriptomic analysis of full-length HIV-1 RNAs reveals functional roles of site-specific m6As
A Baek, GE Lee, S Golconda, A Rayhan… - Nature …, 2024 - nature.com
Although the significance of chemical modifications on RNA is acknowledged, the
evolutionary benefits and specific roles in human immunodeficiency virus (HIV-1) replication …
evolutionary benefits and specific roles in human immunodeficiency virus (HIV-1) replication …
[HTML][HTML] An introduction to nanopore sequencing: past, present, and future considerations
M MacKenzie, C Argyropoulos - Micromachines, 2023 - mdpi.com
There has been significant progress made in the field of nanopore biosensor development
and sequencing applications, which address previous limitations that restricted widespread …
and sequencing applications, which address previous limitations that restricted widespread …
Navigating the pitfalls of mapping DNA and RNA modifications
Y Kong, EA Mead, G Fang - Nature Reviews Genetics, 2023 - nature.com
Chemical modifications to nucleic acids occur across the kingdoms of life and carry
important regulatory information. Reliable high-resolution mapping of these modifications is …
important regulatory information. Reliable high-resolution mapping of these modifications is …
Exploring the epitranscriptome by native RNA sequencing
Chemical RNA modifications, collectively referred to as the “epitranscriptome,” are essential
players in fine-tuning gene expression. Our ability to analyze RNA modifications has …
players in fine-tuning gene expression. Our ability to analyze RNA modifications has …