Using metadynamics to explore complex free-energy landscapes

G Bussi, A Laio - Nature Reviews Physics, 2020 - nature.com
Metadynamics is an atomistic simulation technique that allows, within the same framework,
acceleration of rare events and estimation of the free energy of complex molecular systems …

Advances in theory and their application within the field of zeolite chemistry

V Van Speybroeck, K Hemelsoet, L Joos… - Chemical Society …, 2015 - pubs.rsc.org
Zeolites are versatile and fascinating materials which are vital for a wide range of industries,
due to their unique structural and chemical properties, which are the basis of applications in …

Combining stochastic resetting with Metadynamics to speed-up molecular dynamics simulations

O Blumer, S Reuveni, B Hirshberg - Nature Communications, 2024 - nature.com
Metadynamics is a powerful method to accelerate molecular dynamics simulations, but its
efficiency critically depends on the identification of collective variables that capture the slow …

Enhancing important fluctuations: Rare events and metadynamics from a conceptual viewpoint

O Valsson, P Tiwary, M Parrinello - Annual review of physical …, 2016 - annualreviews.org
Atomistic simulations play a central role in many fields of science. However, their usefulness
is often limited by the fact that many systems are characterized by several metastable states …

Quantum chemical methods for the prediction of energetic, physical, and spectroscopic properties of ionic liquids

EI Izgorodina, ZL Seeger, DLA Scarborough… - Chemical …, 2017 - ACS Publications
The accurate prediction of physicochemical properties of condensed systems is a
longstanding goal of theoretical (quantum) chemistry. Ionic liquids comprising entirely of …

Well-tempered metadynamics converges asymptotically

JF Dama, M Parrinello, GA Voth - Physical review letters, 2014 - APS
Metadynamics is a versatile and capable enhanced sampling method for the computational
study of soft matter materials and biomolecular systems. However, over a decade of …

Operando modeling of zeolite-catalyzed reactions using first-principles molecular dynamics simulations

V Van Speybroeck, M Bocus, P Cnudde… - ACS …, 2023 - ACS Publications
Within this Perspective, we critically reflect on the role of first-principles molecular dynamics
(MD) simulations in unraveling the catalytic function within zeolites under operating …

Uncertainty-driven dynamics for active learning of interatomic potentials

M Kulichenko, K Barros, N Lubbers, YW Li… - Nature Computational …, 2023 - nature.com
Abstract Machine learning (ML) models, if trained to data sets of high-fidelity quantum
simulations, produce accurate and efficient interatomic potentials. Active learning (AL) is a …

First principle chemical kinetics in zeolites: the methanol-to-olefin process as a case study

V Van Speybroeck, K De Wispelaere… - Chemical Society …, 2014 - pubs.rsc.org
To optimally design next generation catalysts a thorough understanding of the chemical
phenomena at the molecular scale is a prerequisite. Apart from qualitative knowledge on the …

[HTML][HTML] CREST—A program for the exploration of low-energy molecular chemical space

P Pracht, S Grimme, C Bannwarth, F Bohle… - The Journal of …, 2024 - pubs.aip.org
Conformer–rotamer sampling tool (CREST) is an open-source program for the efficient and
automated exploration of molecular chemical space. Originally developed in Pracht et …