Polyploidy and novelty: Gottlieb's legacy
Nearly four decades ago, Roose & Gottlieb (Roose & Gottlieb 1976 Evolution 30, 818–
830.(doi: 10.2307/2407821)) showed that the recently derived allotetraploids Tragopogon …
830.(doi: 10.2307/2407821)) showed that the recently derived allotetraploids Tragopogon …
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
Background Plastome (plastid genome) sequences provide valuable information for
understanding the phylogenetic relationships and evolutionary history of plants. Although …
understanding the phylogenetic relationships and evolutionary history of plants. Although …
Evolving ideas on the origin and evolution of flowers: new perspectives in the genomic era
AS Chanderbali, BA Berger, DG Howarth, PS Soltis… - Genetics, 2016 - academic.oup.com
The origin of the flower was a key innovation in the history of complex organisms,
dramatically altering Earth's biota. Advances in phylogenetics, developmental genetics, and …
dramatically altering Earth's biota. Advances in phylogenetics, developmental genetics, and …
Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV
J Shaw, HL Shafer, OR Leonard… - American Journal of …, 2014 - Wiley Online Library
• Premise of the study: Noncoding chloroplast DNA (NC‐cpDNA) sequences are the staple
data source of low‐level phylogeographic and phylogenetic studies of angiosperms. We …
data source of low‐level phylogeographic and phylogenetic studies of angiosperms. We …
Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication
Abstract Background and Aims Theaceae, with three tribes, nine genera and more than 200
species, are of great economic and ecological importance. Recent phylogenetic analyses …
species, are of great economic and ecological importance. Recent phylogenetic analyses …
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
Premise of the study: Targeted sequencing using next‐generation sequencing (NGS)
platforms offers enormous potential for plant systematics by enabling economical acquisition …
platforms offers enormous potential for plant systematics by enabling economical acquisition …
Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae)
LA Ripma, MG Simpson… - Applications in Plant …, 2014 - Wiley Online Library
• Premise of the study: As systematists grapple with how to best harness the power of next‐
generation sequencing (NGS), a deluge of review papers, methods, and analytical tools …
generation sequencing (NGS), a deluge of review papers, methods, and analytical tools …
Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta
IE Jordon‐Thaden, AS Chanderbali… - Applications in plant …, 2015 - Wiley Online Library
Premise of the study: Here we present a series of protocols for RNA extraction across a
diverse array of plants; we focus on woody, aromatic, aquatic, and other chemically complex …
diverse array of plants; we focus on woody, aromatic, aquatic, and other chemically complex …
Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae)
SE Simmonds, JF Smith, C Davidson… - Molecular Phylogenetics …, 2021 - Elsevier
Biological radiations provide unique opportunities to understand the evolution of
biodiversity. One such radiation is the pepper plant family Piperaceae, an early-diverging …
biodiversity. One such radiation is the pepper plant family Piperaceae, an early-diverging …
Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank
J Wen, AJ Harris, SM Ickert‐Bond… - … of Systematics and …, 2017 - Wiley Online Library
Systematics is the science of discovering, organizing and interpreting the diversity of all
living organisms. Recent developments in genomics and biodiversity informatics are …
living organisms. Recent developments in genomics and biodiversity informatics are …