High-resolution native mass spectrometry

S Tamara, MA den Boer, AJR Heck - Chemical Reviews, 2021 - ACS Publications
Native mass spectrometry (MS) involves the analysis and characterization of
macromolecules, predominantly intact proteins and protein complexes, whereby as much as …

Deubiquitinases: From mechanisms to their inhibition by small molecules

SM Lange, LA Armstrong, Y Kulathu - Molecular cell, 2022 - cell.com
Deubiquitinases (DUBs) are specialized proteases that remove ubiquitin from substrates or
cleave within ubiquitin chains to regulate ubiquitylation and therefore play important roles in …

Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search

P Bryant, G Pozzati, W Zhu, A Shenoy… - Nature …, 2022 - nature.com
AlphaFold can predict the structure of single-and multiple-chain proteins with very high
accuracy. However, the accuracy decreases with the number of chains, and the available …

Structure and function of the 26S proteasome

JAM Bard, EA Goodall, ER Greene… - Annual review of …, 2018 - annualreviews.org
As the endpoint for the ubiquitin-proteasome system, the 26S proteasome is the principal
proteolytic machine responsible for regulated protein degradation in eukaryotic cells. The …

The logic of the 26S proteasome

GA Collins, AL Goldberg - Cell, 2017 - cell.com
The ubiquitin proteasome pathway is responsible for most of the protein degradation in
mammalian cells. Rates of degradation by this pathway have generally been assumed to be …

Cryo-EM in drug discovery: achievements, limitations and prospects

JP Renaud, A Chari, C Ciferri, W Liu… - Nature reviews Drug …, 2018 - nature.com
Cryo-electron microscopy (cryo-EM) of non-crystalline single particles is a biophysical
technique that can be used to determine the structure of biological macromolecules and …

Mechanisms of deubiquitinase specificity and regulation

TET Mevissen, D Komander - Annual review of biochemistry, 2017 - annualreviews.org
Protein ubiquitination is one of the most powerful posttranslational modifications of proteins,
as it regulates a plethora of cellular processes in distinct manners. Simple …

[HTML][HTML] In situ structure of neuronal C9orf72 poly-GA aggregates reveals proteasome recruitment

Q Guo, C Lehmer, A Martínez-Sánchez, T Rudack… - Cell, 2018 - cell.com
Protein aggregation and dysfunction of the ubiquitin-proteasome system are hallmarks of
many neurodegenerative diseases. Here, we address the elusive link between these …

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome

Y Dong, S Zhang, Z Wu, X Li, WL Wang, Y Zhu… - Nature, 2019 - nature.com
The proteasome is an ATP-dependent, 2.5-megadalton molecular machine that is
responsible for selective protein degradation in eukaryotic cells. Here we present cryo …

USP14-regulated allostery of the human proteasome by time-resolved cryo-EM

S Zhang, S Zou, D Yin, L Zhao, D Finley, Z Wu, Y Mao - Nature, 2022 - nature.com
Proteasomal degradation of ubiquitylated proteins is tightly regulated at multiple levels,–. A
primary regulatory checkpoint is the removal of ubiquitin chains from substrates by the …