Neofunctionalization of tandem duplicate genes encoding putative β-L-arabinofuranosidases in Arabidopsis

F Tao, V Sollapura, LS Robert, C Fan - Plant Physiology, 2023 - academic.oup.com
Tandem duplication, one of the major types of duplication, provides the raw material for the
evolution of divergent functions. In this study, we identified 1 pair of tandem duplicate genes …

Divergence of gene body DNA methylation and evolution of plant duplicate genes

J Wang, NC Marowsky, C Fan - PloS one, 2014 - journals.plos.org
It has been shown that gene body DNA methylation is associated with gene expression.
However, whether and how deviation of gene body DNA methylation between duplicate …

Spider transcriptomes identify ancient large-scale gene duplication event potentially important in silk gland evolution

TH Clarke, JE Garb, CY Hayashi… - Genome Biology and …, 2015 - academic.oup.com
The evolution of specialized tissues with novel functions, such as the silk synthesizing
glands in spiders, is likely an influential driver of adaptive success. Large-scale gene …

Distinct roles of Arabidopsis ORC1 proteins in DNA replication and heterochromatic H3K27me1 deposition

Z Vergara, MS Gomez, B Desvoyes… - Nature …, 2023 - nature.com
Most cellular proteins involved in genome replication are conserved in all eukaryotic
lineages including yeast, plants and animals. However, the mechanisms controlling their …

The complex allosteric and redox regulation of the fumarate hydratase and malate dehydratase reactions of Arabidopsis thaliana Fumarase 1 and 2 gives clues for …

JP Zubimendi, A Martinatto, MP Valacco… - The FEBS …, 2018 - Wiley Online Library
Arabidopsis thaliana possesses two fumarase genes (FUM), At FUM 1 (At2g47510)
encoding for the mitochondrial Krebs cycle‐associated enzyme and At FUM 2 (At5g50950) …

Genome-Wide Identification and Expression Analysis of the Walnut C-Repeat Binding Factor Gene Family under Low-Temperature Stress

N Liu, H Du, Y Xue, Y Liao, W Zhang, J Ye, Q Wang… - Forests, 2023 - mdpi.com
The walnut (Juglans regia) is a nut with a high nutritional value and has been recognized
throughout the world as an economically important woody plant. However, the walnut is …

Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana

MD Lehti-Shiu, S Uygun, GD Moghe, N Panchy… - Plant …, 2015 - academic.oup.com
Functional divergence between duplicate transcription factors (TF s) has been linked to
critical events in the evolution of land plants and can result from changes in patterns of …

Evolutionary fates and dynamic functionalization of young duplicate genes in Arabidopsis genomes

J Wang, F Tao, NC Marowsky, C Fan - Plant Physiology, 2016 - academic.oup.com
Gene duplication is a primary means to generate genomic novelties, playing an essential
role in speciation and adaptation. Particularly in plants, a high abundance of duplicate …

Adaptive evolution and divergent expression of heat stress transcription factors in grasses

Z Yang, Y Wang, Y Gao, Y Zhou, E Zhang, Y Hu… - BMC evolutionary …, 2014 - Springer
Background Heat stress transcription factors (Hsfs) regulate gene expression in response to
heat and many other environmental stresses in plants. Understanding the adaptive evolution …

Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species

Q Pei, N Li, Q Yang, T Wu, S Feng, X Feng, Z Jing… - Frontiers in …, 2021 - frontiersin.org
The family Apiaceae includes many important vegetables and medicinal plants. Auxin
response factors (ARFs) play critical roles in regulating plant growth and development. Here …