[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice
T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …
material and thus opportunities to acquire new gene functions for an organism, with major …
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Highlights•Dosage balance is fluid and will change over time.•Duplicate genes are
preserved by interplay of multiple overlapping mechanisms.•Distinguishing duplicate gene …
preserved by interplay of multiple overlapping mechanisms.•Distinguishing duplicate gene …
[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants
T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular Biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …
found. Duplicated genes following WGD often have different fates that can quickly disappear …
Development of two major resources for pea genomics: the GenoPea 13.2 K SNP Array and a high‐density, high‐resolution consensus genetic map
N Tayeh, C Aluome, M Falque, F Jacquin… - The Plant …, 2015 - Wiley Online Library
Single nucleotide polymorphism (SNP) arrays represent important genotyping tools for
innovative strategies in both basic research and applied breeding. Pea is an important food …
innovative strategies in both basic research and applied breeding. Pea is an important food …
F-box genes: Genome-wide expansion, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri)
F-box gene family, as one of the largest gene families in plants, plays crucial roles in
regulating plant development, reproduction, cellular protein degradation and responses to …
regulating plant development, reproduction, cellular protein degradation and responses to …
[HTML][HTML] Different patterns of gene structure divergence following gene duplication in Arabidopsis
Y Wang, X Tan, AH Paterson - BMC genomics, 2013 - Springer
Background Divergence in gene structure following gene duplication is not well understood.
Gene duplication can occur via whole-genome duplication (WGD) and single-gene …
Gene duplication can occur via whole-genome duplication (WGD) and single-gene …
[HTML][HTML] Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant …
Background Resistance genes composing the two-layer immune system of plants are
thought as important markers for breeding pathogen-resistant crops. Many have been the …
thought as important markers for breeding pathogen-resistant crops. Many have been the …
[HTML][HTML] Comprehensive Genome-Wide Identification of the RNA-Binding Glycine-Rich Gene Family and Expression Profiling under Abiotic Stress in Brassica …
M Duan, M Zong, N Guo, S Han, G Wang, L Miao, F Liu - Plants, 2023 - mdpi.com
The RNA-binding glycine-rich proteins (RBGs) of the glycine-rich protein family play vital
roles in regulating gene expression both at the transcriptional and post-transcriptional …
roles in regulating gene expression both at the transcriptional and post-transcriptional …
[HTML][HTML] Bioinformatics Analysis of the Lipoxygenase Gene Family in Radish (Raphanus sativus) and Functional Characterization in Response to Abiotic and Biotic …
J Wang, T Hu, W Wang, H Hu, Q Wei, X Wei… - International Journal of …, 2019 - mdpi.com
Lipoxygenases (LOXs) are non-heme iron-containing dioxygenases involved in many
developmental and stress-responsive processes in plants. However, little is known about the …
developmental and stress-responsive processes in plants. However, little is known about the …
[HTML][HTML] Both mechanism and age of duplications contribute to biased gene retention patterns in plants
Background All extant seed plants are successful paleopolyploids, whose genomes carry
duplicate genes that have survived repeated episodes of diploidization. However, the …
duplicate genes that have survived repeated episodes of diploidization. However, the …