[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

GC Conant, JA Birchler, JC Pires - Current opinion in plant biology, 2014 - Elsevier
Highlights•Dosage balance is fluid and will change over time.•Duplicate genes are
preserved by interplay of multiple overlapping mechanisms.•Distinguishing duplicate gene …

[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular Biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …

Development of two major resources for pea genomics: the GenoPea 13.2 K SNP Array and a high‐density, high‐resolution consensus genetic map

N Tayeh, C Aluome, M Falque, F Jacquin… - The Plant …, 2015 - Wiley Online Library
Single nucleotide polymorphism (SNP) arrays represent important genotyping tools for
innovative strategies in both basic research and applied breeding. Pea is an important food …

F-box genes: Genome-wide expansion, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri)

GM Wang, H Yin, X Qiao, X Tan, C Gu, BH Wang… - Plant Science, 2016 - Elsevier
F-box gene family, as one of the largest gene families in plants, plays crucial roles in
regulating plant development, reproduction, cellular protein degradation and responses to …

[HTML][HTML] Different patterns of gene structure divergence following gene duplication in Arabidopsis

Y Wang, X Tan, AH Paterson - BMC genomics, 2013 - Springer
Background Divergence in gene structure following gene duplication is not well understood.
Gene duplication can occur via whole-genome duplication (WGD) and single-gene …

[HTML][HTML] Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant …

HVS Rody, RGH Bombardelli, S Creste, LEA Camargo… - BMC genomics, 2019 - Springer
Background Resistance genes composing the two-layer immune system of plants are
thought as important markers for breeding pathogen-resistant crops. Many have been the …

[HTML][HTML] Comprehensive Genome-Wide Identification of the RNA-Binding Glycine-Rich Gene Family and Expression Profiling under Abiotic Stress in Brassica …

M Duan, M Zong, N Guo, S Han, G Wang, L Miao, F Liu - Plants, 2023 - mdpi.com
The RNA-binding glycine-rich proteins (RBGs) of the glycine-rich protein family play vital
roles in regulating gene expression both at the transcriptional and post-transcriptional …

[HTML][HTML] Bioinformatics Analysis of the Lipoxygenase Gene Family in Radish (Raphanus sativus) and Functional Characterization in Response to Abiotic and Biotic …

J Wang, T Hu, W Wang, H Hu, Q Wei, X Wei… - International Journal of …, 2019 - mdpi.com
Lipoxygenases (LOXs) are non-heme iron-containing dioxygenases involved in many
developmental and stress-responsive processes in plants. However, little is known about the …

[HTML][HTML] Both mechanism and age of duplications contribute to biased gene retention patterns in plants

HVS Rody, GJ Baute, LH Rieseberg, LO Oliveira - BMC genomics, 2017 - Springer
Background All extant seed plants are successful paleopolyploids, whose genomes carry
duplicate genes that have survived repeated episodes of diploidization. However, the …