Biofilm control by interfering with c-di-GMP metabolism and signaling

X Liu, B Cao, L Yang, JD Gu - Biotechnology Advances, 2022 - Elsevier
Biofilm formation and biofilm-induced biodeterioration of surfaces have deeply affected the
life of our community. Cyclic dimeric guanosine monophosphate (c-di-GMP) is a small …

Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP,(p) ppGpp signaling in bacteria and implications in pathogenesis

D Kalia, G Merey, S Nakayama, Y Zheng… - Chemical Society …, 2013 - pubs.rsc.org
For an organism to survive, it must be able to sense its environment and regulate
physiological processes accordingly. Understanding how bacteria integrate signals from …

RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP

CA Kellenberger, SC Wilson, J Sales-Lee… - Journal of the …, 2013 - ACS Publications
Cyclic dinucleotides are an important class of signaling molecules that regulate a wide
variety of pathogenic responses in bacteria, but tools for monitoring their regulation in vivo …

Small molecule anti-biofilm agents developed on the basis of mechanistic understanding of biofilm formation

K Qvortrup, LD Hultqvist, M Nilsson… - Frontiers in …, 2019 - frontiersin.org
Microbial biofilms are the cause of persistent infections associated with various medical
implants and distinct body sites such as the urinary tract, lungs, and wounds. Compared with …

Engineering and in vivo applications of riboswitches

ZF Hallberg, Y Su, RZ Kitto… - Annual review of …, 2017 - annualreviews.org
Riboswitches are common gene regulatory units mostly found in bacteria that are capable of
altering gene expression in response to a small molecule. These structured RNA elements …

Metabolite recognition principles and molecular mechanisms underlying riboswitch function

A Serganov, DJ Patel - Annual review of biophysics, 2012 - annualreviews.org
Riboswitches are mRNA elements capable of modulating gene expression in response to
specific binding by cellular metabolites. Riboswitches exert their function through the …

Control of bacterial exoelectrogenesis by c-AMP-GMP

JW Nelson, N Sudarsan, GE Phillips… - Proceedings of the …, 2015 - National Acad Sciences
Major changes in bacterial physiology including biofilm and spore formation involve
signaling by the cyclic dinucleotides c-di-GMP and c-di-AMP. Recently, another second …

Cyclic dinucleotide (c-di-GMP, c-di-AMP, and cGAMP) signalings have come of age to be inhibited by small molecules

C Opoku-Temeng, J Zhou, Y Zheng, J Su… - Chemical …, 2016 - pubs.rsc.org
Bacteria utilize nucleotide-based second messengers to regulate a myriad of physiological
processes. Cyclic dinucleotides have emerged as central regulators of bacterial physiology …

Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter

H Zhou, C Zheng, J Su, B Chen, Y Fu, Y Xie, Q Tang… - Scientific reports, 2016 - nature.com
Abstract c-di-GMP riboswitches are structured RNAs located in the 5′-untranslated regions
(5′-UTRs) of mRNAs that regulate expression of downstream genes in response to …

Emerging applications of riboswitches–from antibacterial targets to molecular tools

P Machtel, K Bąkowska-Żywicka, M Żywicki - Journal of applied genetics, 2016 - Springer
The ability to precisely regulate gene expression is one of the most important features of the
living cells as it enables the adaptation and survival in different environmental conditions …