Identifiability analysis for stochastic differential equation models in systems biology

AP Browning, DJ Warne, K Burrage… - Journal of the …, 2020 - royalsocietypublishing.org
Mathematical models are routinely calibrated to experimental data, with goals ranging from
building predictive models to quantifying parameters that cannot be measured. Whether or …

Calibration of ionic and cellular cardiac electrophysiology models

DG Whittaker, M Clerx, CL Lei… - … Systems Biology and …, 2020 - Wiley Online Library
Cardiac electrophysiology models are among the most mature and well‐studied
mathematical models of biological systems. This maturity is bringing new challenges as …

The 'Digital Twin'to enable the vision of precision cardiology

J Corral-Acero, F Margara, M Marciniak… - European heart …, 2020 - academic.oup.com
Providing therapies tailored to each patient is the vision of precision medicine, enabled by
the increasing ability to capture extensive data about individual patients. In this position …

Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators

M Strocchi, S Longobardi, CM Augustin… - PLoS Computational …, 2023 - journals.plos.org
Cardiac pump function arises from a series of highly orchestrated events across multiple
scales. Computational electromechanics can encode these events in physics-constrained …

Deep learning-based reduced order models in cardiac electrophysiology

S Fresca, A Manzoni, L Dedè, A Quarteroni - PloS one, 2020 - journals.plos.org
Predicting the electrical behavior of the heart, from the cellular scale to the tissue level, relies
on the numerical approximation of coupled nonlinear dynamical systems. These systems …

Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium

L Cai, L Ren, Y Wang, W Xie… - Royal Society open …, 2021 - royalsocietypublishing.org
A long-standing problem at the frontier of biomechanical studies is to develop fast methods
capable of estimating material properties from clinical data. In this paper, we have studied …

Systems toxicology: real world applications and opportunities

T Hartung, RE FitzGerald, P Jennings… - Chemical research in …, 2017 - ACS Publications
Systems Toxicology aims to change the basis of how adverse biological effects of
xenobiotics are characterized from empirical end points to describing modes of action as …

Is MC dropout bayesian?

LL Folgoc, V Baltatzis, S Desai, A Devaraj… - arXiv preprint arXiv …, 2021 - arxiv.org
MC Dropout is a mainstream" free lunch" method in medical imaging for approximate
Bayesian computations (ABC). Its appeal is to solve out-of-the-box the daunting task of ABC …

Uncertainty Quantification Reveals the Importance of Data Variability and Experimental Design Considerations for in Silico Proarrhythmia Risk Assessment

KC Chang, S Dutta, GR Mirams, KA Beattie… - Frontiers in …, 2017 - frontiersin.org
The Comprehensive in vitro Proarrhythmia Assay (CiPA) is a global initiative intended to
improve drug proarrhythmia risk assessment using a new paradigm of mechanistic assays …

Uncertainty‐aware Visualization in Medical Imaging‐A Survey

C Gillmann, D Saur, T Wischgoll… - Computer Graphics …, 2021 - Wiley Online Library
Medical imaging (image acquisition, image transformation, and image visualization) is a
standard tool for clinicians in order to make diagnoses, plan surgeries, or educate students …