LncRNA structural characteristics in epigenetic regulation

C Wang, L Wang, Y Ding, X Lu, G Zhang… - International Journal of …, 2017 - mdpi.com
The rapid development of new generation sequencing technology has deepened the
understanding of genomes and functional products. RNA-sequencing studies in mammals …

Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species

K Muret, C Désert, L Lagoutte, M Boutin, F Gondret… - BMC genomics, 2019 - Springer
Background Lipids are important for the cell and organism life since they are major
components of membranes, energy reserves and are also signal molecules. The main …

LNCipedia 5: towards a reference set of human long non-coding RNAs

PJ Volders, J Anckaert, K Verheggen… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large …

Standing genetic variation as the predominant source for adaptation of a songbird

YT Lai, CKL Yeung, KE Omland… - Proceedings of the …, 2019 - National Acad Sciences
What kind of genetic variation contributes the most to adaptation is a fundamental question
in evolutionary biology. By resequencing genomes of 80 individuals, we inferred the origin …

Long non-coding RNAs: a novel paradigm for toxicology

JL Dempsey, JY Cui - Toxicological Sciences, 2017 - academic.oup.com
Long non-coding RNAs (lncRNAs) are over 200 nucleotides in length and are transcribed
from the mammalian genome in a tissue-specific and developmentally regulated pattern …

Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Association of prepregnancy body mass index, rate of gestational weight gain with pregnancy outcomes in Chinese urban women

X Wang, X Zhang, M Zhou, J Juan, X Wang - Nutrition & metabolism, 2019 - Springer
Background The prevalence of obesity and excessive gestational weight gain (GWG) has
been increasing worldwide. The aims of this study were to evaluate associations of …

CRISPR screening of porcine sgRNA library identifies host factors associated with Japanese encephalitis virus replication

C Zhao, H Liu, T Xiao, Z Wang, X Nie, X Li… - Nature …, 2020 - nature.com
Japanese encephalitis virus (JEV) is a mosquito-borne zoonotic flavivirus that causes
encephalitis and reproductive disorders in mammalian species. However, the host factors …

Systematic identification of long noncoding RNAs in immature and mature porcine testes

M Ran, B Chen, Z Li, M Wu, X Liu, C He… - Biology of …, 2016 - academic.oup.com
Thousands of long noncoding RNAs (lncRNAs) have been identified in mouse, rat, and
human testes, some of which play important roles in testis development and …

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

S Banerjee, P Bhandary, M Woodhouse, TZ Sen… - BMC …, 2021 - Springer
Background Gene annotation in eukaryotes is a non-trivial task that requires meticulous
analysis of accumulated transcript data. Challenges include transcriptionally active regions …