New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

K Luger, ML Dechassa, DJ Tremethick - Nature reviews Molecular cell …, 2012 - nature.com
The compaction of genomic DNA into chromatin has profound implications for the regulation
of key processes such as transcription, replication and DNA repair. Nucleosomes, the …

[HTML][HTML] Histones: at the crossroads of peptide and protein chemistry

MM Müller, TW Muir - Chemical reviews, 2015 - ACS Publications
1. INTRODUCTION In eukaryotic cells, inheritable information is stored in a nucleoprotein
complex referred to as chromatin. 1 This genome architecture serves two key purposes. On …

Structural basis of histone H2A–H2B recognition by the essential chaperone FACT

M Hondele, T Stuwe, M Hassler, F Halbach, A Bowman… - Nature, 2013 - nature.com
Facilitates chromatin transcription (FACT) is a conserved histone chaperone that
reorganizes nucleosomes and ensures chromatin integrity during DNA transcription …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Overcoming the nucleosome barrier during transcript elongation

SJ Petesch, JT Lis - Trends in genetics, 2012 - cell.com
RNA polymerase II (Pol II) must break the nucleosomal barrier to gain access to DNA and
transcribe genes efficiently. New single-molecule techniques have elucidated many …

[HTML][HTML] H2A. Z controls the stability and mobility of nucleosomes to regulate expression of the LH genes

S Rudnizky, A Bavly, O Malik, L Pnueli… - Nature …, 2016 - nature.com
The structure and dynamics of promoter chromatin have a profound effect on the expression
levels of genes. Yet, the contribution of DNA sequence, histone post-translational …

Real-time multistep asymmetrical disassembly of nucleosomes and chromatosomes visualized by high-speed atomic force microscopy

B Onoa, C Díaz-Celis, C Cañari-Chumpitaz… - ACS Central …, 2023 - ACS Publications
During replication, expression, and repair of the eukaryotic genome, cellular machinery must
access the DNA wrapped around histone proteins forming nucleosomes. These octameric …

Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA

WL Hwang, S Deindl, BT Harada, X Zhuang - Nature, 2014 - nature.com
Imitation switch (ISWI)-family remodelling enzymes regulate access to genomic DNA by
mobilizing nucleosomes. These ATP-dependent chromatin remodellers promote …

Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension

P Lebel, A Basu, FC Oberstrass, EM Tretter, Z Bryant - Nature methods, 2014 - nature.com
Single-molecule measurements of DNA twist and extension have been used to reveal
physical properties of the double helix and to characterize structural dynamics and …

Revealing transient structures of nucleosomes as DNA unwinds

Y Chen, JM Tokuda, T Topping, JL Sutton… - Nucleic acids …, 2014 - academic.oup.com
The modulation of DNA accessibility by nucleosomes is a fundamental mechanism of gene
regulation in eukaryotes. The nucleosome core particle (NCP) consists of 147 bp of DNA …