The structure and dynamics of multilayer networks

S Boccaletti, G Bianconi, R Criado, CI Del Genio… - Physics reports, 2014 - Elsevier
In the past years, network theory has successfully characterized the interaction among the
constituents of a variety of complex systems, ranging from biological to technological, and …

Constraint-based models predict metabolic and associated cellular functions

A Bordbar, JM Monk, ZA King, BO Palsson - Nature Reviews Genetics, 2014 - nature.com
The prediction of cellular function from a genotype is a fundamental goal in biology. For
metabolism, constraint-based modelling methods systematize biochemical, genetic and …

[图书][B] Multilayer networks: structure and function

G Bianconi - 2018 - books.google.com
Multilayer networks is a rising topic in Network Science which characterizes the structure
and the function of complex systems formed by several interacting networks. Multilayer …

The fundamental advantages of temporal networks

A Li, SP Cornelius, YY Liu, L Wang, AL Barabási - Science, 2017 - science.org
Most networked systems of scientific interest are characterized by temporal links, meaning
the network's structure changes over time. Link temporality has been shown to hinder many …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

What is Twitter, a social network or a news media?

H Kwak, C Lee, H Park, S Moon - … of the 19th international conference on …, 2010 - dl.acm.org
Twitter, a microblogging service less than three years old, commands more than 41 million
users as of July 2009 and is growing fast. Twitter users tweet about any topic within the 140 …

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0

J Schellenberger, R Que, RMT Fleming, I Thiele… - Nature protocols, 2011 - nature.com
Over the past decade, a growing community of researchers has emerged around the use of
constraint-based reconstruction and analysis (COBRA) methods to simulate, analyze and …

Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

NE Lewis, H Nagarajan, BO Palsson - Nature Reviews Microbiology, 2012 - nature.com
Reconstructed microbial metabolic networks facilitate a mechanistic description of the
genotype–phenotype relationship through the deployment of constraint-based …

A protocol for generating a high-quality genome-scale metabolic reconstruction

I Thiele, BØ Palsson - Nature protocols, 2010 - nature.com
Network reconstructions are a common denominator in systems biology. Bottom–up
metabolic network reconstructions have been developed over the last 10 years. These …

[图书][B] Dynamical processes on complex networks

A Barrat, M Barthelemy, A Vespignani - 2008 - books.google.com
The availability of large data sets has allowed researchers to uncover complex properties
such as large-scale fluctuations and heterogeneities in many networks, leading to the …