A ribosome profiling study of mRNA cleavage by the endonuclease RelE

JY Hwang, AR Buskirk - Nucleic acids research, 2016 - academic.oup.com
Implicated in persistence and stress response pathways in bacteria, RelE shuts down
protein synthesis by cleaving mRNA within the ribosomal A site. Structural and biochemical …

Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a β-strand sliding mechanism

S Hadži, A Garcia-Pino, S Haesaerts… - Nucleic acids …, 2017 - academic.oup.com
Toxin–antitoxin (TA) modules are small operons involved in bacterial stress response and
persistence. higBA operons form a family of TA modules with an inverted gene organization …

The toxin from a ParDE toxin‐antitoxin system found in Pseudomonas aeruginosa offers protection to cells challenged with anti‐gyrase antibiotics

M Muthuramalingam, JC White, T Murphy… - Molecular …, 2019 - Wiley Online Library
Toxin‐antitoxin systems are mediators of diverse activities in bacterial physiology. For the
ParE‐type toxins, their reported role of gyrase inhibition utilized during plasmid‐segregation …

Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF*♦

V Zorzini, A Mernik, J Lah, YGJ Sterckx… - Journal of Biological …, 2016 - ASBMB
Escherichia coli MazF (EcMazF) is the archetype of a large family of ribonucleases involved
in bacterial stress response. The crystal structure of EcMazF in complex with a 7-nucleotide …

Convergent evolution of the Barnase/EndoU/Colicin/RelE (BECR) fold in antibacterial tRNase toxins

GC Gucinski, K Michalska, F Garza-Sánchez… - Structure, 2019 - cell.com
Contact-dependent growth inhibition (CDI) is a form of interbacterial competition mediated
by CdiB-CdiA two-partner secretion systems. CdiA effector proteins carry polymorphic C …

Mechanism of endonuclease cleavage by the HigB toxin

MA Schureck, A Repack, SJ Miles… - Nucleic acids …, 2016 - academic.oup.com
Bacteria encode multiple type II toxin–antitoxin modules that cleave ribosome-bound
mRNAs in response to stress. All ribosome-dependent toxin family members structurally …

High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP

BP Klemm, AP Sikkema, AL Hsu, JC Horng… - Journal of Biological …, 2022 - ASBMB
Deoxynucleoside triphosphate (dNTP) triphosphohydrolases (dNTPases) are important
enzymes that may perform multiple functions in the cell, including regulating the dNTP pools …

Significant loop motions in the SsoPTP protein tyrosine phosphatase allow for dual general acid functionality

J Pinkston, J Jo, KJ Olsen, D Comer, CA Glaittli… - Biochemistry, 2021 - ACS Publications
Conformational dynamics are important factors in the function of enzymes, including protein
tyrosine phosphatases (PTPs). Crystal structures of PTPs first revealed the motion of a …

Bifunctional substrate activation via an arginine residue drives catalysis in chalcone isomerases

JR Burke, JJ La Clair, RN Philippe, A Pabis… - ACS …, 2019 - ACS Publications
Chalcone isomerases are plant enzymes that perform enantioselective oxa-Michael
cyclizations of 2′-hydroxychalcones into flavanones. An X-ray crystal structure of an …

RelEB3 toxin–antitoxin system of Salmonella Typhimurium with a ribosome-independent toxin and a mutated non-neutralising antitoxin

TY Yusof, EBB Ong, AH Teh - International Journal of Biological …, 2022 - Elsevier
The RelEB3 toxin–antitoxin (TA) system of Salmonella enterica subsp. enterica serovar
Typhimurium consists of a RelE3 toxin which suppresses bacterial growth, but its RelB3 …