A review of cell-based computational modeling in cancer biology
Cancer biology involves complex, dynamic interactions between cancer cells and their
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …
Simulating cancer growth with multiscale agent-based modeling
There have been many techniques developed in recent years to in silico model a variety of
cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling …
cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling …
[HTML][HTML] PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
A Ghaffarizadeh, R Heiland, SH Friedman… - PLoS computational …, 2018 - journals.plos.org
Many multicellular systems problems can only be understood by studying how cells move,
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …
[HTML][HTML] Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results
P Van Liedekerke, MM Palm, N Jagiella… - Computational particle …, 2015 - Springer
In this paper we present an overview of agent-based models that are used to simulate
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …
Impact of metabolic heterogeneity on tumor growth, invasion, and treatment outcomes
M Robertson-Tessi, RJ Gillies, RA Gatenby… - Cancer research, 2015 - AACR
Histopathologic knowledge that extensive heterogeneity exists between and within tumors
has been confirmed and deepened recently by molecular studies. However, the impact of …
has been confirmed and deepened recently by molecular studies. However, the impact of …
[HTML][HTML] Chaste: an open source C++ library for computational physiology and biology
Chaste—C ancer, H eart A nd S oft T issue E nvironment—is an open source C++ library for
the computational simulation of mathematical models developed for physiology and biology …
the computational simulation of mathematical models developed for physiology and biology …
Mathematical modeling of tumor growth and treatment
H Enderling, M AJ Chaplain - Current pharmaceutical design, 2014 - ingentaconnect.com
Using mathematical models to simulate dynamic biological processes has a long history.
Over the past couple of decades or so, quantitative approaches have also made their way …
Over the past couple of decades or so, quantitative approaches have also made their way …
A computational multiscale agent-based model for simulating spatio-temporal tumour immune response to PD1 and PDL1 inhibition
When the immune system responds to tumour development, patterns of immune infiltrates
emerge, highlighted by the expression of immune checkpoint-related molecules such as …
emerge, highlighted by the expression of immune checkpoint-related molecules such as …
[HTML][HTML] In silico modelling of cancer nanomedicine, across scales and transport barriers
Nanoparticles promise to improve the treatment of cancer through their increasingly
sophisticated functionalisations and ability to accumulate in certain tumours. Yet recent work …
sophisticated functionalisations and ability to accumulate in certain tumours. Yet recent work …
[HTML][HTML] Cellular potts modeling of tumor growth, tumor invasion, and tumor evolution
A Szabó, RMH Merks - Frontiers in oncology, 2013 - frontiersin.org
Despite a growing wealth of available molecular data, the growth of tumors, invasion of
tumors into healthy tissue, and response of tumors to therapies are still poorly understood …
tumors into healthy tissue, and response of tumors to therapies are still poorly understood …