[HTML][HTML] Structure-based virtual screening: from classical to artificial intelligence

EHB Maia, LC Assis, TA De Oliveira… - Frontiers in …, 2020 - frontiersin.org
The drug development process is a major challenge in the pharmaceutical industry since it
takes a substantial amount of time and money to move through all the phases of developing …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Interactiongraphnet: A novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions

D Jiang, CY Hsieh, Z Wu, Y Kang, J Wang… - Journal of medicinal …, 2021 - ACS Publications
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …

Advancing drug discovery via artificial intelligence

HCS Chan, H Shan, T Dahoun, H Vogel… - Trends in pharmacological …, 2019 - cell.com
Drug discovery and development are among the most important translational science
activities that contribute to human health and wellbeing. However, the development of a new …

Predicting drug–target interaction using a novel graph neural network with 3D structure-embedded graph representation

J Lim, S Ryu, K Park, YJ Choe, J Ham… - Journal of chemical …, 2019 - ACS Publications
We propose a novel deep learning approach for predicting drug–target interaction using a
graph neural network. We introduce a distance-aware graph attention algorithm to …

[HTML][HTML] MoleculeNet: a benchmark for molecular machine learning

Z Wu, B Ramsundar, EN Feinberg, J Gomes… - Chemical …, 2018 - pubs.rsc.org
Molecular machine learning has been maturing rapidly over the last few years. Improved
methods and the presence of larger datasets have enabled machine learning algorithms to …

Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer

C Shen, X Zhang, Y Deng, J Gao, D Wang… - Journal of Medicinal …, 2022 - ACS Publications
The past few years have witnessed enormous progress toward applying machine learning
approaches to the development of protein–ligand scoring functions. However, the robust …

An overview of scoring functions used for protein–ligand interactions in molecular docking

J Li, A Fu, L Zhang - Interdisciplinary Sciences: Computational Life …, 2019 - Springer
Currently, molecular docking is becoming a key tool in drug discovery and molecular
modeling applications. The reliability of molecular docking depends on the accuracy of the …

[HTML][HTML] Artificial intelligence and machine learning technology driven modern drug discovery and development

C Sarkar, B Das, VS Rawat, JB Wahlang… - International Journal of …, 2023 - mdpi.com
The discovery and advances of medicines may be considered as the ultimate relevant
translational science effort that adds to human invulnerability and happiness. But advancing …

Protein–ligand scoring with convolutional neural networks

M Ragoza, J Hochuli, E Idrobo, J Sunseri… - Journal of chemical …, 2017 - ACS Publications
Computational approaches to drug discovery can reduce the time and cost associated with
experimental assays and enable the screening of novel chemotypes. Structure-based drug …