(Non) parallel evolution

DI Bolnick, RDH Barrett, KB Oke… - Annual Review of …, 2018 - annualreviews.org
Parallel evolution across replicate populations has provided evolutionary biologists with
iconic examples of adaptation. When multiple populations colonize seemingly similar …

Studying the gut virome in the metagenomic era: challenges and perspectives

S Garmaeva, T Sinha, A Kurilshikov, J Fu, C Wijmenga… - BMC biology, 2019 - Springer
The human gut harbors a complex ecosystem of microorganisms, including bacteria and
viruses. With the rise of next-generation sequencing technologies, we have seen a quantum …

[图书][B] Mechanisms of life history evolution: the genetics and physiology of life history traits and trade-offs

T Flatt, A Heyland - 2011 - books.google.com
Life history theory seeks to explain the evolution of the major features of life cycles by
analyzing the ecological factors that shape age-specific schedules of growth, reproduction …

The molecular basis of phenotypic convergence

EB Rosenblum, CE Parent… - Annual Review of Ecology …, 2014 - annualreviews.org
Understanding what aspects of evolution are predictable, and repeatable, is a central goal of
biology. Studying phenotypic convergence (the independent evolution of similar traits in …

Initial mutations direct alternative pathways of protein evolution

MLM Salverda, E Dellus, FA Gorter, AJM Debets… - PLoS …, 2011 - journals.plos.org
Whether evolution is erratic due to random historical details, or is repeatedly directed along
similar paths by certain constraints, remains unclear. Epistasis (ie non-additive interaction …

Rapid diversification of coevolving marine Synechococcus and a virus

MF Marston, FJ Pierciey Jr, A Shepard… - Proceedings of the …, 2012 - National Acad Sciences
Marine viruses impose a heavy mortality on their host bacteria, whereas at the same time the
degree of viral resistance in marine bacteria appears to be high. Antagonistic coevolution …

Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution

BC Dickinson, AM Leconte, B Allen… - Proceedings of the …, 2013 - National Acad Sciences
To what extent are evolutionary outcomes determined by a population's recent environment,
and to what extent do they depend on historical contingency and random chance? Here we …

Contingency and chance erase necessity in the experimental evolution of ancestral proteins

VC Xie, J Pu, BPH Metzger, JW Thornton… - Elife, 2021 - elifesciences.org
The roles of chance, contingency, and necessity in evolution are unresolved because they
have never been assessed in a single system or on timescales relevant to historical …

The evolution of life history trade-offs in viruses

DH Goldhill, PE Turner - Current opinion in virology, 2014 - Elsevier
Highlights•Life history trade-offs are experienced by both eukaryotic viruses and by
phage.•Experimental evolution is a powerful method to study viral trade-offs.•Intracellular …

[HTML][HTML] The spectrum of adaptive mutations in experimental evolution

GI Lang, MM Desai - Genomics, 2014 - Elsevier
A primary goal of recent work in experimental evolution is to probe the molecular basis of
adaptation. This requires an understanding of the individual mutations in evolving …