Molecular biology of bladder cancer: new insights into pathogenesis and clinical diversity

MA Knowles, CD Hurst - Nature reviews cancer, 2015 - nature.com
Urothelial carcinoma of the bladder comprises two long-recognized disease entities with
distinct molecular features and clinical outcome. Low-grade non-muscle-invasive tumours …

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

JM Dowen, ZP Fan, D Hnisz, G Ren, BJ Abraham… - Cell, 2014 - cell.com
The pluripotent state of embryonic stem cells (ESCs) is produced by active transcription of
genes that control cell identity and repression of genes encoding lineage-specifying …

Key role for CTCF in establishing chromatin structure in human embryos

X Chen, Y Ke, K Wu, H Zhao, Y Sun, L Gao, Z Liu… - Nature, 2019 - nature.com
In the interphase of the cell cycle, chromatin is arranged in a hierarchical structure within the
nucleus,, which has an important role in regulating gene expression,,–. However, the …

Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes

AG Diehl, N Ouyang, AP Boyle - Nature communications, 2020 - nature.com
Chromatin looping is important for gene regulation, and studies of 3D chromatin structure
across species and cell types have improved our understanding of the principles governing …

[HTML][HTML] A cohesive look at leukemogenesis: The cohesin complex and other driving mutations in AML

KE Heimbruch, AE Meyer, P Agrawal, AD Viny, S Rao - Neoplasia, 2021 - Elsevier
Acute myeloid leukemia (AML) affects tens of thousands of patients a year, yet survival rates
are as low as 25% in certain populations. This poor survival rate is partially due to the vast …

A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth

C Wang, X Liu, J Liang, Y Narita, W Ding, D Li… - Nature …, 2023 - nature.com
Epstein-Barr virus (EBV) immortalization of resting B lymphocytes (RBLs) to lymphoblastoid
cell lines (LCLs) models human DNA tumor virus oncogenesis. RBL and LCL chromatin …

The cohesin subunit Rad21 is a negative regulator of hematopoietic self-renewal through epigenetic repression of Hoxa7 and Hoxa9

JB Fisher, J Peterson, M Reimer, C Stelloh, K Pulakanti… - Leukemia, 2017 - nature.com
Acute myelogenous leukemia (AML) is a high-risk hematopoietic malignancy caused by a
variety of mutations, including genes encoding the cohesin complex. Recent studies have …

The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation

SL Houlihan, Y Feng - Elife, 2014 - elifesciences.org
Successfully completing the S phase of each cell cycle ensures genome integrity.
Impediment of DNA replication can lead to DNA damage and genomic disorders. In this …

[HTML][HTML] The role of loops on the order of eukaryotes and prokaryotes

A Hofmann, DW Heermann - FEBS letters, 2015 - Elsevier
The study of the three-dimensional organization of chromatin has recently gained much
focus in the context of novel techniques for detecting genome-wide contacts using next …

3D genome architecture from populations to single cells

M Furlan-Magaril, C Varnai, T Nagano… - Current opinion in genetics …, 2015 - Elsevier
Dominated by microscopy for decades the nuclear genome organization field has recently
undergone a dramatic transition fuelled by new next generation sequencing technologies …