An interactive time series image analysis software for dendritic spines

AÖ Argunşah, E Erdil, MU Ghani, Y Ramiro-Cortés… - Scientific reports, 2022 - nature.com
Live fluorescence imaging has demonstrated the dynamic nature of dendritic spines, with
changes in shape occurring both during development and in response to activity. The …

Homeostatic plasticity scales dendritic spine volumes and changes the threshold and specificity of Hebbian plasticity

AF Hobbiss, Y Ramiro-Cortés, I Israely - IScience, 2018 - cell.com
Information is encoded in neural networks through changes in synaptic weights. Synaptic
learning rules involve a combination of rapid Hebbian plasticity and slower homeostatic …

Homosynaptic plasticity induction causes heterosynaptic changes at the unstimulated neighbors in an induction pattern and location-specific manner

AÖ Argunsah, I Israely - Frontiers in Cellular Neuroscience, 2023 - frontiersin.org
Dendritic spines are highly dynamic structures whose structural and functional fluctuations
depend on multiple factors. Changes in synaptic strength are not limited to synapses directly …

Tracking-assisted detection of dendritic spines in time-lapse microscopic images

L Rada, B Kilic, E Erdil, Y Ramiro-Cortés, I Israely… - Neuroscience, 2018 - Elsevier
Detecting morphological changes of dendritic spines in time-lapse microscopy images and
correlating them with functional properties such as memory and learning, are fundamental …

Automatic dendritic spine detection using multiscale dot enhancement filters and sift features

L Rada, E Erdil, AO Argunsah, D Unay… - … Conference on Image …, 2014 - ieeexplore.ieee.org
Statistical characterization of morphological changes of dendritic spines is becoming of
crucial interest in the field of neurobiology. Automatic detection and segmentation of …

SpineS: An interactive time-series analysis software for dendritic spines

AÖ Argunşah, E Erdil, MU Ghani, YR Cortés… - bioRxiv, 2020 - biorxiv.org
Live fluorescence imaging has shown the dynamic nature of dendritic spines, with changes
in shape occurring both during development and in response to activity. The structure of a …

A watershed and active contours based method for dendritic spine segmentation in 2-photon microscopy images

E Erdil, AÖ Argunşah, D Ünay… - 2013 21st Signal …, 2013 - ieeexplore.ieee.org
Analysing morphological and volumetric properties of dendritic spines from 2-photon
microscopy images has been of interest to neuroscientists in recent years. Developing …

Precision Medicine for the Intervertebral Disc: Image Processing and Computational Modeling of Disc Degeneration to Inform Patient-Specific Therapies

SR Ahrens - 2021 - ir.library.oregonstate.edu
The human intervertebral disc is a deceptively simple structure which plays an essential role
in human movement. Even slight changes to the disc microenvironment can have far …

Biomedical image time series registration with particle filtering

AM Yağcı, E Erdil, AÖ Argunşah, D Ünay… - 2013 21st Signal …, 2013 - ieeexplore.ieee.org
We propose a family of methods for biomedical image time series registration based on
Particle filtering. The first method applies an intensity-based information-theoretic approach …

3B dendritic spine segmentation using nonparametric shape priors

E Böcügöz, E Erdil, AÖ Argunşah… - 2017 25th Signal …, 2017 - ieeexplore.ieee.org
Analyzing morphological and structural changes of dendritic spines in 2-photon microscopy
images in time is important for neuroscience researchers. Correct segmentation of dendritic …