Life and death in the soil microbiome: how ecological processes influence biogeochemistry
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …
Soil viral diversity, ecology and climate change
JK Jansson, R Wu - Nature Reviews Microbiology, 2023 - nature.com
Soil viruses are highly abundant and have important roles in the regulation of host dynamics
and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems …
and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems …
Proksee: in-depth characterization and visualization of bacterial genomes
JR Grant, E Enns, E Marinier, A Mandal… - Nucleic acids …, 2023 - academic.oup.com
Abstract Proksee (https://proksee. ca) provides users with a powerful, easy-to-use, and
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
Identification of mobile genetic elements with geNomad
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …
understanding their diversity, ecology, biotechnological applications and impact on public …
Profiling the human intestinal environment under physiological conditions
The spatiotemporal structure of the human microbiome,, proteome and metabolome, reflects
and determines regional intestinal physiology and may have implications for disease. Yet …
and determines regional intestinal physiology and may have implications for disease. Yet …
Systematic and quantitative view of the antiviral arsenal of prokaryotes
Bacteria and archaea have developed multiple antiviral mechanisms, and genomic
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …
Pharokka: a fast scalable bacteriophage annotation tool
In recent years, there has been an increasing interest in bacteriophages, which has led to
growing numbers of bacteriophage genomic sequences becoming available. Consequently …
growing numbers of bacteriophage genomic sequences becoming available. Consequently …
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
Wildfire-dependent changes in soil microbiome diversity and function
Forest soil microbiomes have crucial roles in carbon storage, biogeochemical cycling and
rhizosphere processes. Wildfire season length, and the frequency and size of severe fires …
rhizosphere processes. Wildfire season length, and the frequency and size of severe fires …
Interrogating the viral dark matter of the rumen ecosystem with a global virome database
The diverse rumen virome can modulate the rumen microbiome, but it remains largely
unexplored. Here, we mine 975 published rumen metagenomes for viral sequences, create …
unexplored. Here, we mine 975 published rumen metagenomes for viral sequences, create …