Non-model organisms, a species endangered by proteogenomics

J Armengaud, J Trapp, O Pible, O Geffard… - Journal of …, 2014 - Elsevier
Previously, large-scale proteomics was possible only for organisms whose genomes were
sequenced, meaning the most common model organisms. The use of next-generation …

The use of-omic tools in the study of disease processes in marine bivalve mollusks

M Gomez-Chiarri, X Guo, A Tanguy, Y He… - Journal of invertebrate …, 2015 - Elsevier
Our understanding of disease processes and host–pathogen interactions in model species
has benefited greatly from the application of medium and high-throughput genomic …

Quantitative alterations in bovine milk proteome from healthy, subclinical and clinical mastitis during S. aureus infection

S Maity, D Das, K Ambatipudi - Journal of proteomics, 2020 - Elsevier
Bovine mastitis, caused by Staphylococcus aureus, is a major impediment to milk production
and lacks markers to indicate disease progression in cows and buffaloes. Thus, the focus of …

Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis

R Dineshram, V Thiyagarajan, A Lane, Y Ziniu, S Xiao… - Marine Biology, 2013 - Springer
Ocean acidification (OA) is beginning to have noticeable negative impact on calcification
rate, shell structure and physiological energy budgeting of several marine organisms; these …

RNA-seq coupled to proteomic analysis reveals high sperm proteome variation between two closely related marine mussel species

MR Romero, A Pérez-Figueroa, M Carrera… - Journal of …, 2019 - Elsevier
Speciation mechanisms in marine organisms have attracted great interest because of the
apparent lack of substantial barriers to genetic exchange in marine ecosystems. Marine …

Shotgun Proteomics Analysis Discards Alkali Labile Phosphate as a Reliable Method To Assess Vitellogenin Levels in Mytilus galloprovincialis

P Sánchez-Marín… - Environmental …, 2017 - ACS Publications
Vitellogenin, the egg yolk precursor, is a well-known biomarker of endocrine disruption in
oviparous vertebrates. In invertebrates, such as bivalves, it has been used in the last 10 …

2-DE Mapping of the blue mussel gill proteome: the usual suspects revisited

B Rocher, F Bultelle, P Chan, F Le Foll, J Letendre… - Proteomes, 2015 - mdpi.com
The Blue Mussel (Mytilus edulis, L. 1758) is an ecologically important and commercially
relevant bivalve. Because of its ability to bioconcentrate xenobiotics, it is also a widespread …

Exploiting genomic data to identify proteins involved in abalone reproduction

O Mendoza-Porras, NA Botwright, SM McWilliam… - Journal of …, 2014 - Elsevier
Aside from their critical role in reproduction, abalone gonads serve as an indicator of sexual
maturity and energy balance, two key considerations for effective abalone culture …

[HTML][HTML] The complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus (Bivalvia, Veneridae)

F Ghiselli, L Milani, M Iannello, E Procopio, PL Chang… - PeerJ, 2017 - peerj.com
Despite the large number of animal complete mitochondrial genomes currently available in
public databases, knowledge about mitochondrial genomics in invertebrates is uneven. This …

[HTML][HTML] Proteomic characterization of oyster shell organic matrix proteins (OMP)

A Upadhyay, V Thiyagarajan, Y Tong - Bioinformation, 2016 - ncbi.nlm.nih.gov
Oysters are economically and ecologically important bivalves, with its calcareous shell and
delicious meat. The shell composition is a blend of inorganic crystals and shell proteins that …