Community profiling of the urinary microbiota: considerations for low-biomass samples
L Karstens, M Asquith, V Caruso… - Nature Reviews …, 2018 - nature.com
Many studies have shown that the urinary tract harbours its own microbial community known
as the urinary microbiota, which have been implicated in urinary tract disorders. This …
as the urinary microbiota, which have been implicated in urinary tract disorders. This …
[HTML][HTML] The microbiome and lung cancer
A Maddi, A Sabharwal, T Violante… - Journal of thoracic …, 2019 - ncbi.nlm.nih.gov
It has become increasingly clear that we live in a symbiotic relationship with microbes within
us. We are just beginning to unravel the nature and strength of this relationship and its …
us. We are just beginning to unravel the nature and strength of this relationship and its …
Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity …
Advances in the analysis of amplicon sequence datasets have introduced a methodological
shift in how research teams investigate microbial biodiversity, away from sequence identity …
shift in how research teams investigate microbial biodiversity, away from sequence identity …
Irradiation at ultra-high (FLASH) dose rates reduces acute normal tissue toxicity in the mouse gastrointestinal system
JL Ruan, C Lee, S Wouters, IDC Tullis… - International Journal of …, 2021 - Elsevier
Purpose Preclinical studies using ultra-high dose rate (FLASH) irradiation have
demonstrated reduced normal tissue toxicity compared with conventional dose rate (CONV) …
demonstrated reduced normal tissue toxicity compared with conventional dose rate (CONV) …
Microbiota-based markers predictive of development of Clostridioides difficile infection
Antibiotic-induced modulation of the intestinal microbiota can lead to Clostridioides difficile
infection (CDI), which is associated with considerable morbidity, mortality, and healthcare …
infection (CDI), which is associated with considerable morbidity, mortality, and healthcare …
Soil microbial community structure and functionality changes in response to long‐term metal and radionuclide pollution
T Rogiers, J Claesen, A Van Gompel… - Environmental …, 2021 - Wiley Online Library
Microbial communities are essential for a healthy soil ecosystem. Metals and radionuclides
can exert a persistent pressure on the soil microbial community. However, little is known on …
can exert a persistent pressure on the soil microbial community. However, little is known on …
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology
C Weißbecker, B Schnabel, A Heintz-Buschart - GigaScience, 2020 - academic.oup.com
Background Amplicon sequencing of phylogenetic marker genes, eg, 16S, 18S, or ITS
ribosomal RNA sequences, is still the most commonly used method to determine the …
ribosomal RNA sequences, is still the most commonly used method to determine the …
The influences of bioinformatics tools and reference databases in analyzing the human oral microbial community
There is currently no criterion to select appropriate bioinformatics tools and reference
databases for analysis of 16S rRNA amplicon data in the human oral microbiome. Our study …
databases for analysis of 16S rRNA amplicon data in the human oral microbiome. Our study …
The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease
The aetiopathogenesis of inflammatory bowel diseases (IBD) involves the complex
interaction between a patient's genetic predisposition, environment, gut microbiota and …
interaction between a patient's genetic predisposition, environment, gut microbiota and …
Alterations of gut microbiota biodiversity and relative abundance in women with PCOS: A systematic review and meta-analysis
Y Zou, R Liao, R Cheng, H Chung, H Zhu… - Microbial Pathogenesis, 2023 - Elsevier
Background Numerous studies have implicated that the gut microbiota is associated with
polycystic ovary syndrome (PCOS). However, a comprehensive data-based summary shown …
polycystic ovary syndrome (PCOS). However, a comprehensive data-based summary shown …