Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

The changing paradigm of intron retention: regulation, ramifications and recipes

G Monteuuis, JJL Wong, CG Bailey… - Nucleic acids …, 2019 - academic.oup.com
Intron retention (IR) is a form of alternative splicing that has long been neglected in
mammalian systems although it has been studied for decades in non-mammalian species …

Exploitation of drought tolerance-related genes for crop improvement

J Wang, C Li, L Li, M Reynolds, X Mao… - International Journal of …, 2021 - mdpi.com
Drought has become a major threat to food security, because it affects crop growth and
development. Drought tolerance is an important quantitative trait, which is regulated by …

Phytophthora effectors modulate genome-wide alternative splicing of host mRNAs to reprogram plant immunity

J Huang, X Lu, H Wu, Y Xie, Q Peng, L Gu, J Wu… - Molecular plant, 2020 - cell.com
Alternative splicing (AS) of pre-mRNAs increases transcriptome and proteome diversity,
regulates gene expression through multiple mechanisms, and plays important roles in plant …

Stress-induced changes in alternative splicing landscape in rice: functional significance of splice isoforms in stress tolerance

SA Ganie, ASN Reddy - Biology, 2021 - mdpi.com
Simple Summary Environmental stresses adversely affect rice production. Understanding
the molecular responses of rice to these stresses will have an enormous impact on the …

The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors

R Rigo, J Bazin, N Romero‐Barrios, M Moison… - EMBO …, 2020 - embopress.org
Alternative splicing (AS) is a major source of transcriptome diversity. Long noncoding RNA s
(lnc RNA s) have emerged as regulators of AS through different molecular mechanisms. In …

Pathogen-responsive alternative splicing in plant immunity

DP Godinho, RJR Yanez, P Duque - Trends in Plant Science, 2024 - cell.com
Plant immunity involves a complex and finely tuned response to a wide variety of pathogens.
Alternative splicing, a post-transcriptional mechanism that generates multiple transcripts …

Integrative analysis in Pinus revealed long‐term heat stress splicing memory

V Roces, L Lamelas, L Valledor, M Carbó… - The Plant …, 2022 - Wiley Online Library
Due to the current climate change, many studies have described main drivers in abiotic
stress. Recent findings suggest that alternative splicing (AS) has a critical role in controlling …

QuantAS: a comprehensive pipeline to study alternative splicing by absolute quantification of splice isoforms.

YC Song, MX Chen, KL Zhang, ASN Reddy… - New …, 2023 - search.ebscohost.com
In general, QuantAS provides an accurate quantitative method for isoform quantification,
reduces systematic errors in experiments, and demonstrates high compatibility and …

Arabidopsis SRPKII family proteins regulate flowering via phosphorylation of SR proteins and effects on gene expression and alternative splicing

T Wang, X Wang, H Wang, C Yu, C Xiao… - New …, 2023 - Wiley Online Library
Alternative splicing of pre‐mRNAs is crucial for plant growth and development.
Serine/arginine‐rich (SR) proteins are a conserved family of RNA‐binding proteins that are …